Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq1623 111 1e-19 seq593 109 4e-19 seq420 109 4e-19 seq48 102 6e-17 >seq1623 Length=5066 Score = 111 bits (122), Expect = 1e-19 Identities = 151/211 (72%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| ||||| || ||||| |||||||| ||| ||| | | | || || Sbjct 119 AACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 178 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || || | || | ||| ||||| ||| || |||||||||||||| Sbjct 179 AAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTG 238 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | ||||| | || || ||||| || || || ||||| ||||| || Sbjct 239 GATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTT 298 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||| ||||| ||||| ||||| ||||||||| Sbjct 299 ACCAGTCAGGGTTTTAACAAAGATTTGCATA 329 >seq593 Length=58250 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| || ||||| |||||||| || ||| | | | || || Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || || || | || | ||| ||||| ||| |||||||||||||||||| Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | ||||| | || || || || || || || ||||| ||||| ||| Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || ||||| |||||||| ||||||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCATA 28920 Score = 96.9 bits (106), Expect = 2e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| || ||||| || ||||| |||||||| ||| ||| | | | || || Sbjct 29586 AACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTC 29527 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| || || ||| | || | | ||||| ||| |||||||||||||||||| Sbjct 29526 GAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTG 29467 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||| ||| | || ||| | || || || || || || || || ||||| || || Sbjct 29466 AATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTT 29407 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || || || || |||||||| ||||||||| Sbjct 29406 GCCAGTGAGGGTCTTTACAAATATTTGCATA 29376 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| || ||| | | | || || Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| || || || | || | ||| ||||| ||| ||| |||||||||||||| | Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 29238 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || ||| | || || || || || || || | ||| ||||| || Sbjct 29237 ATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTT 29178 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 || |||| || |||||||| ||||||||| Sbjct 29177 CCAGTCAAGGTCTTTACAAAGATTTGCATA 29148 >seq420 Length=40905 Score = 109 bits (120), Expect = 4e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| |||||||| ||||| ||||||||||||||||| || ||| | | | || || Sbjct 13336 AACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 13395 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| |||||||| | || | || || |||||| ||| |||||||||||||| Sbjct 13396 AAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTG 13455 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | || ||| | || || || || || || || ||||||||||| || Sbjct 13456 GATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTT 13515 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || ||||| ||||| Sbjct 13516 TCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || || ||||| |||||||| ||| ||| | | | || || Sbjct 13792 AACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTC 13851 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | ||| ||||| || | || | ||| ||||| ||| ||| |||||||||||||| Sbjct 13852 GAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 13911 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 || ||| | |||||| | || || || || ||| || || | || ||||| || Sbjct 13912 GATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTT 13971 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| ||| || || ||||| ||||| Sbjct 13972 TCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| ||||||||||||||||| || ||| | | | || || Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||| || | || | || ||||| ||| |||||| || ||||| || | Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || ||||| || || || |||||||| || || Sbjct 13685 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTG 13744 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| || || ||||| ||||| Sbjct 13745 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 >seq48 Length=44992 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || |||||||||||||| ||| ||| | | | || || Sbjct 22156 ACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCATCCTCG 22097 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||| ||||||||| | || | ||| ||||| ||| ||| |||||||||||||| Sbjct 22096 AGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22037 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || ||||| || || || | || ||||| || Sbjct 22036 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGACCTCAAGTGTGATGGTCTTG 21977 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || |||| || ||||| ||||||||||| Sbjct 21976 CCAGTCAATGTCTTTACGAAAATTTGCAT 21948 Score = 98.7 bits (108), Expect = 7e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| || ||||| |||||||| || ||| | | | || || Sbjct 22840 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 22781 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || ||||||||| | || | ||| ||||| ||| ||| |||||||||||||| | Sbjct 22780 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 22721 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || ||| | || || | || || ||||| || || || || ||||| || || Sbjct 22720 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTG 22661 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || ||||| ||||| ||||| ||||| Sbjct 22660 CCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357330998211425