Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011589.1 Length=40287 Score E Sequences producing significant alignments: (Bits) Value seq2781 253 5e-63 seq241 118 3e-22 seq215 98.7 3e-16 seq140 84.2 6e-12 >seq2781 Length=3553 Score = 253 bits (280), Expect = 5e-63 Identities = 523/760 (69%), Gaps = 16/760 (2%) Strand=Plus/Plus Query 28557 GCCGTCACGCAGACCATCGAGGTAATCCGCCCAGACCTGCATCATCCGCACG-CGCTCCT 28615 |||||| ||||| | ||||| || || |||||| ||||||||| || || ||| | Sbjct 2303 GCCGTCGCGCAGGGCGTCGAGATAGTCGGCCCAGCGCTGCATCATG-GCGCGGCGCGCAG 2361 Query 28616 GCAGGTGCGATGTGCGGTTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCT 28675 ||||||||| |||||||||||||| || ||||| || || | || ||| || |||| Sbjct 2362 GCAGGTGCGCCGTGCGGTTGTAGGCGCGCCCGTTCGGGTCGATGACGCTGTGCGCCAGCT 2421 Query 28676 GGTGCTCGATGATGTCCGGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCG 28735 |||||||||| | |||| ||| ||||| || ||||| || |||||||| ||| | | Sbjct 2422 GGTGCTCGATCAGGTCCACGCGCTCCTGCAGCACTTCGTCGAGGATGGTGCGGGCCATGG 2481 Query 28736 CGCGGAAGCCGTGGCCGGTCATCATCGTGC-GGTCGTAACCCATGTTGCGCAGCGCTGCG 28794 ||||||| |||||||||||||| | | | | | | || |||| | |||||||| || Sbjct 2482 CGCGGAAACCGTGGCCGGTCATGA-CTTCCTTGGCATAGCCCAGGGACCGCAGCGCCGCA 2540 Query 28795 GTAACGGCGTTCTCTGACATCGGGCGTTTGGAATCGCGGGCGCCAGAGAACACCCACTTG 28854 | | || ||| || ||| ||| | | ||| | | ||| ||| || || Sbjct 2541 TTGATGGTGTTTTCGCTCATGCAGCGCTGGCCGCCGC-GCAGGCAGGGAA-ACACATAGC 2598 Query 28855 TGCC--GGCCGGTGATCGGCTTGATGTCCTCCAGGATCTGCAGCGCCTGCCTGGACAGCG 28912 ||| |||||||| |||| | | ||||||| || ||||| | | ||||| Sbjct 2599 GGCCTTCGCCGGTGACAGGCTGCAGCGCGCGCAGGATCGCCACGGCCTGTGTCGGCAGCG 2658 Query 28913 GCACCAGGTGCGC-AGCACGCATCTTCATCTTGCTGGCAGGGATGGTCCACACGGCCGCG 28971 |||||||||| | ||| |||| ||||| || ||||| |||||| |||| |||| || Sbjct 2659 GCACCAGGTGTTCGAGC-TGCATTTTCATTTTCCTGGCCGGGATGCGCCACTCGGCGGCA 2717 Query 28972 TCGAGGTCGAACTCCTCCCATTCCGCATGCCGCAGTTCGCCAGGACGCAGGAACACCAGC 29031 ||||| | || || |||||| || ||||||||||| ||||||| ||||| || Sbjct 2718 TCGAGATGGATTTCGCTCCATTCGGCGGCGCGCAGTTCGCCGGGACGCACGAACAGCATG 2777 Query 29032 GGCGCCAGCCGCAGCGCCGCGCGTGTGATGGCAGATCCGCTGTATGCCTCGATGGAGCGC 29091 |||||||| ||||||||| | || | || ||| | ||||||| |||| Sbjct 2778 GGCGCCAGTTTCAGCGCCGCCACCGCCGTGACGTGGCCCTGGTAGCCGTCGATGGCGCGC 2837 Query 29092 AGCA--GGCCACCCAGCTGCACGGGGTCAGTAATCGCCGCATGGTG-GGCCTCCTTAGGC 29148 |||| ||| || | || | || || || | |||| | ||| | ||| | | Sbjct 2838 AGCAGCGGCGCGACATC-GC-CCGGTTCCGTCAGTGCCGGGTAGTGCGTTCTCGGCA-CC 2894 Query 29149 GGCGCGAGCGCTCCTTTCAGGTCGGCAACCGGGTTTCGCTCGGCGCGGCCAGTGGCCACG 29208 |||| | || ||||||||||| || || |||||| || || | | |||||| Sbjct 2895 GGCGTCAATGCGCCTTTCAGGTCCGCCGTGACGTCGCGCTCGACGAGGTCCATCGCCACG 2954 Query 29209 GCGTAGCGCATGATCTGGCCGCAGTTCTGCATGATCCGATGCGCGGATTCGATTGCGCCG 29268 || |||||| | ||| ||||| |||| |||| || ||||| || ||||| |||||| Sbjct 2955 CCGAAGCGCAGCACCTGACCGCACAGCTGCTTGATGCGGTGCGCCGAATCGATCGCGCCG 3014 Query 29269 CGTTCCTCGATGCGTCGGGCCACCCGGAGGAAGTCGGGCG 29308 || |||||| ||| | |||| || || | |||| ||| Sbjct 3015 CGCGCCTCGACGCGCTGTACCACGCGCAGCACGTCGCGCG 3054 >seq241 Length=54637 Score = 118 bits (130), Expect = 3e-22 Identities = 177/249 (71%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 28573 TCGAGGTAATCCGCCCAGACCTGCATCATCCGCACGCGCTCCTGCAGGTGCGATGTGCGG 28632 || || ||||| | ||| |||||||||| || || ||| |||| || ||| Sbjct 22031 TCCAGATAATCTGACCATTGCTGCATCATCTTTTTCCGTTCGGACAGATGCGCAGTACGG 21972 Query 28633 TTGTAGGCCCGGCCGTTGGGATCCTTCACCGCGTGAGCAAGCTGGTGCTCGATGATGTCC 28692 || || |||| |||||| ||||| |||||| || || || ||||||||||| | |||| Sbjct 21971 TTATATGCCCTGCCGTTCGGATCTCGCACCGCATGGGCCAGTTGGTGCTCGATCAGGTCC 21912 Query 28693 GGGCGGAAGTGCAGGACCTCGTCCAGAATGGTGCGAGCCGTCGCGCGGAAGCCGTGGCCG 28752 || || | | || || ||||| || || ||||| ||| |||| ||||| ||||||||| Sbjct 21911 GGACGCACGCCAAGCACTTCGTCAAGGATCGTGCGCGCCATCGCCCGGAAACCGTGGCCG 21852 Query 28753 GTCATCATCGT-GCGGTCGTAACCCATGTTGCGCAGCGCTGCGGTAACGGCGTTCTCTGA 28811 ||||| |||| ||| ||||| |||||| ||| || || ||||| || Sbjct 21851 CTCATC-TCGTCTTTCTCGATGCCCATCCTGCGCATCGCCGCCAGAATCGCGTTGTCGCT 21793 Query 28812 CATCGGGCG 28820 ||||||||| Sbjct 21792 CATCGGGCG 21784 >seq215 Length=48791 Score = 98.7 bits (108), Expect = 3e-16 Identities = 92/117 (79%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 10063 TCCGGGCCTTGGGCAAGACCCTGCTCACCTACCAGCGCAAGCATGGCCTGCGAACGGTGA 10122 |||| ||| |||||||| ||||| ||||| ||||||||||| || | || |||| Sbjct 37317 TCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAGCACGGGTTAAAGACCGTGA 37376 Query 10123 AGGAGATCATCGGTCGCTGGGCGCCACCGGTGGAGAACAACACCACCGCATACGTGC 10179 ||| ||||||| ||||||||||||| | ||||||||| | ||| | || ||||||| Sbjct 37377 AGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATACCGCTGCCTACGTGC 37433 >seq140 Length=92187 Score = 84.2 bits (92), Expect = 6e-12 Identities = 143/201 (71%), Gaps = 10/201 (5%) Strand=Plus/Minus Query 583 AAGGAGTACTGGCCGGCCGGTATGGTCAAGAAGGGCCACTTCCACCTGATCGGCGGA--- 639 ||| ||||||||||| |||||||| || ||||| || |||||||| ||| Sbjct 85091 AAGCAGTACTGGCCGCCCGGTATGTCTAAAGAGGGCGCTTTTCACCTGATTGGCCCTCAC 85032 Query 640 --AGTCCCCAGTGGATCT-TGCTGGTGGCCGAGGGCTACGCCACTGCGGCCACGCTGCAC 696 || ||| | | | | |||||||| |||||||||||||| | || | |||||| Sbjct 85031 CCAGAGCCCGGCGAACCGGTGCTGGTGTGTGAGGGCTACGCCACGGGCGCAAGCCTGCAC 84972 Query 697 ATGGCTACG-GGCTACCCGGTGGCCGTGGCGTTCGATGCCGGCAACATGCTGGCCGTCGC 755 ||||| ||| ||| | | || ||| | || ||||| || |||||| ||||| | ||| | Sbjct 84971 ATGGCGACGTCGCT-CACTGTCGCCATCGCCTTCGACGCGGGCAACCTGCTGCCTGTCTC 84913 Query 756 CTCGGCCCTG-GCGAAGCGCT 775 | |||| || ||| |||||| Sbjct 84912 CAAGGCCATGCGCG-AGCGCT 84893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128775379884690