Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011611.1 Length=36885 Score E Sequences producing significant alignments: (Bits) Value seq523 567 2e-157 seq9928 104 6e-18 seq215 98.7 2e-16 >seq523 Length=83696 Score = 567 bits (628), Expect = 2e-157 Identities = 1128/1642 (69%), Gaps = 49/1642 (3%) Strand=Plus/Plus Query 177 ATCCAGCGGCCTGCCCATACCACGCGACCAATGATGTCGATTGCCTCTAGGTCTTGCTTG 236 ||||| | ||| |||||||| ||||| ||||| || || | | | | | | | || Sbjct 48650 ATCCAACCGCCAGCCCATACTACGCGGCCAATTATCTCCAGGTCGTTCAACTTATCCCTG 48709 Query 237 G--ACACGTACATCGTCTGGTAGGCCGAATTAGCGCTAATGATCGC--TAGACCGCCATT 292 | ||| | |||| |||||||| || | || ||||| |||||| | | Sbjct 48710 GGGACAACCATATCGC--GGTAGGCCTTGTTCTCACTGATGATGTGAATAGACC--CGTC 48765 Query 293 GATTTGCCGCTGGATTCGCTTGGCGTATAGGTGGTCATCCAACCGAATGACGTAGATAGC 352 || |||||||||| | || || || || |||||||||| ||| |||||||| | ||| Sbjct 48766 GAACTGCCGCTGGAGCCTTTTCGCATAGAGATGGTCATCCAGCCGGATGACGTATACAGC 48825 Query 353 CTCGTCGCGGACCTCGCCGCAGCTGTGGTCAATCATCACCGTATCACCATCGCTCAACAG 412 ||| | | | || || |||||||||||||||||| ||||| |||||||| | || Sbjct 48826 CTCTCCCTCAAGCGAGCTGCGGCTGTGGTCAATCATCACAGTATCGCCATCGCTTAGAAG 48885 Query 413 CGGCTCCATTGAGTCACCGCCGATGCGAACGGCTGACATATTCGCTATCTCCAGACCTTG 472 |||||| || || ||| | | || | || |||| ||| ||||| ||||| Sbjct 48886 TCCCTCCATCGAATCCCCGTCCACTCGGATTGCGGACAGTCGCGCAGAGTCCAGGCCTTG 48945 Query 473 CTTCCGCAAGC-TGTA-GCGAGTGAACGCCAGCTTGGCCAAGGTCCG-CGCGCCCTCCAT 529 ||| || |||| ||| ||| |||||||| ||| ||| ||| | | || || || | Sbjct 48946 CTTGCG-AAGCGAGTACGCG-GTGAACGCAAGC-TGGGTTAGGACAGTAGCCCCTTCGCT 49002 Query 530 CCAGGAACCGTGGCCAGCACTCACCCGCGCGTCGTAGAGGGGTACGTAGGCGTAGGTGTC 589 ||||| ||||| || ||||| | |||||||| | || ||||| ||||| |||| Sbjct 49003 CCAGGCGCCGTGTCCCGCACTACAGTGGGCGTCGTACAAAGGCACGTAAGCGTACTTGTC 49062 Query 590 ATCCTCTGCGGCTTCATCCGGG--GCAGCGCTGTGCA---TTTCCCCCTCCCCGGTAGCT 644 ||| | || | ||| ||||| | | || | |||||||| || | ||| Sbjct 49063 CTCCGCAATGG-----ACTGGGAAGCAGCTCCCTTCAACTTGTCCCCCTCGCCTGAAGCA 49117 Query 645 AGCCAGCCAATGTCCACCCCCGCAGCCTTTGCAATGTCCACACACCGCGCAAGCTTGGGT 704 |||||||||||||| || || | ||||| || ||||| ||||||||||| | |||||| Sbjct 49118 AGCCAGCCAATGTCGACGCCGACCGCCTTAGCGATGTCTACACACCGCGCTACCTTGGGC 49177 Query 705 TCACTGTCGCCGGTCAAGTAGTACTCCAGGGTACGCCTAGGGATAGCGGTTAGTCGCGCG 764 ||||| | ||||||| ||| ||||| ||||| || | ||||||||||| |||||||| Sbjct 49178 TCACTCTGCCCGGTCAGGTAATACTCAAGGGTGCGTCGTGGGATAGCGGTAAGTCGCGCC 49237 Query 765 AGTTCATCGCCACTTCCAACCAAGGCGGCGCAGGTTCTAATCCGAGCAGCCAGACCTTCG 824 | |||||||||||||| | | | ||||| | || || | ||||| |||||| Sbjct 49238 AACTCATCGCCACTTCCCGCTATCTCAGCGCATTGCCGGATACGTTCCGCCAGCCCTTCG 49297 Query 825 GTCATTTCGCTTTCCCCTCAGAAGAAAGCGAAA-TGCAGCCAAGAAAAATAGCTAAATTT 883 ||||||||||||| || || | ||||| ||| || | | || ||| |||||| Sbjct 49298 CTCATTTCGCTTTCTCCCTTGAGCTATCCGAAACGGCATCCCTGCACAA-AGCGAAATTT 49356 Query 884 CGCTTTGTC-AGGAAGCCTTTAGATATCAATGACTTAGCCAATTCTCGCCTCTTTATTGA 942 |||||| || | ||||| ||| | ||||| || ||| ||| || | | | Sbjct 49357 CGCTTTCTCGATAAAGCC-TTACAGATCAAAGAGATAGACAAAATCAACCACCATCAAGC 49415 Query 943 TAAATCTGGCAAGCGAAACGCCATTTTTCGCTTTACCAGCTGGCTGTTAATGGCTATGTT 1002 ||| ||| |||||||| ||||||||||||||||||| | | | | |||||||||| Sbjct 49416 CAAAGATGGAAAGCGAAAAGCCATTTTTCGCTTTACCACATAGTTATATTTGGCTATGTT 49475 Query 1003 TATGCCCTAAGTCACGTTAGACAACCCAAGTAGTCGCCCTGCATGGCGGCT-GAAATGGA 1061 ||||||||| || |||||||||| ||||| | | |||| || || | |||||| Sbjct 49476 TATGCCCTAGGTAACGTTAGACATCCCAAAAAACCACCCTTGCCGGTGGTTATGAATGGA 49535 Query 1062 ACGTAGGCATGAACAGAACCGAAATCCCCCGCGACAACAACGTCCGCTGGGAGTGGATCA 1121 |||||||||||| |||||||||||| | ||| | | | || ||||| ||||||| Sbjct 49536 CGCTAGGCATGAACAAAACCGAAATCCCGCTTGACCCAACCCTGCGATGGGAATGGATCA 49595 Query 1122 AATACCAGCTCCGTGCCAGGGGGTCGTCCCTGGCTGAGGTGGCCCGCTCCCTCGACGTCT 1181 ||||||| || ||| || | || |||| || || |||| || || ||||| | Sbjct 49596 AATACCAACTTCGTACCCGAGGTACGTCACTCGCAATCTTGGCGCGTGAACTTGACGT-T 49654 Query 1182 CCAG-CCCGGCAGTCAAAAACGCCAAGCTGACTCCCTACCCTCGGGTAGAGCGCGCCATA 1240 ||| | || ||||| ||||| |||| || | || || || | ||||| || || Sbjct 49655 ACAGATGCTGCCGTCAAGAACGCTAAGCGCACCGCATATCCGCGAATGGAGCGAGCTATT 49714 Query 1241 GCTGCTGTACTCGACCTCAGCCCGCTAGTGCTGTGGCCAGAGCGCTGGCTAGACGACGAG 1300 || || || | ||||| || | | ||||||| || || ||| | ||| Sbjct 49715 GCCCGTGCGCTAGGCCTCAAGCCAATCGACTTGTGGCCCGAACGTTGGAACGCAAACGGC 49774 Query 1301 AATCCGAAGCGGCAACGGCCGAATCGCTCGGAGACCTTGCAGGCATATGTCAGACATATG 1360 | || | || ||| | | ||| | || || | ||| | || || | Sbjct 49775 ACCCCACACCGTATTCGGGTGCAGCGCGCAGA-AC--ACAACGCA-ACTTC-----TA-G 49824 Query 1361 CCAGGTGCTGAGGAAAATACCAGATACGCTGACCAAGCGCAGCGTAAAGCCGGCGCGGGG 1420 ||| | || | | |||| | || || || |||||| ||||| ||| | Sbjct 49825 CCAAGAGC------ATAACCCAGCT--TATGCCCTTCGACACCGTAAAACCGGCACGGAG 49876 Query 1421 GCTTGAACATGGCCCGCCGCAAAGACGATCGAACGCTGGACATCTTCGATGTTCCGCAGC 1480 | | |||||| ||| || || ||||| ||| | ||||||||| ||| || |||| Sbjct 49877 GTATAAACATGCGCCGTGTAAAGGATGATCGTACGTTAGACATCTTCTCTGTCCCACAGC 49936 Query 1481 CGGCCCTCGCTATACCTGGTGAGTGCAACTACGCCGCTCAAGTCAGCGAACTGGTCAGCG 1540 | | || ||||| || || | ||||| | ||||| || ||||| |||||| |||||| Sbjct 49937 CAGTTCTGGCTATCCCAGGGAATGGCAACAATGCCGCACAGGTCAGTGAACTGATCAGCG 49996 Query 1541 AAATTCTGAAGGCTTGCGACCTTGACCGTTACGAGGTCGCCGCCCGGATGTCGCGCCTGT 1600 | |||||||| | || ||| || ||||||||||| | | || || ||||| ||| ||| Sbjct 49997 AGATTCTGAAAGGTTCCGATCTGGACCGTTACGAAATTGGTGCACGCATGTCTCGCTTGT 50056 Query 1601 CCGGCGATGACGTGAGCAAGAACATGCTCGACGCCTGGTCGAGTCCCGCCCGAACTGATC 1660 | |||||||||||||| ||| ||||||| ||||| |||||||| || |||||||| || | Sbjct 50057 CTGGCGATGACGTGAGTAAGCACATGCTTGACGCGTGGTCGAGCCCAGCCCGAACAGACC 50116 Query 1661 ACAACTTGCCTTTCTACCGCGCCGCCCTTCTGGAGGACGTCTGCGCGAGCCATCTGCTGA 1720 | ||| |||| ||||| | ||| | || || || || || || || || | | | Sbjct 50117 ATAACCTGCCGTTCTATAGAGCCCCACTGCTTGAAGAAGTTTGTAGCAGTCACGTTTTAA 50176 Query 1721 CCAACTGGCTGGTCGATGTACGTGGCGGCCGCGTGGCTTACGGCCGCGATGCACTGCTCG 1780 || |||||||||| || |||||| ||||||||||||||||| ||||||||||| || Sbjct 50177 CCGACTGGCTGGTTGAGCAACGTGGTGGCCGCGTGGCTTACGGTCGCGATGCACTCAACG 50236 Query 1781 CCGAACTGGGCCGCCTTGAGCG 1802 | || || || || || | ||| Sbjct 50237 CGGAGCTTGGTCGTCTGGCGCG 50258 Score = 131 bits (144), Expect = 4e-26 Identities = 122/152 (80%), Gaps = 5/152 (3%) Strand=Plus/Plus Query 9443 CATTGAGCGAAACCGCCCCGGCCTGGCCGGGACGGTCTGCCGGACGTGGTAGTCCGGTAC 9502 |||| ||||||| ||||||||| | | ||| |||||||||||||||||| ||||||||| Sbjct 56889 CATTAAGCGAAATCGCCCCGGCGCG-CTGGGGCGGTCTGCCGGACGTGGTTGTCCGGTAC 56947 Query 9503 TGATGAGCAGCCACCCATGACGAACGAA--ACCAAGACAGACCGCCAGCGCCGCCTGGCG 9560 ||||||||||||||||||||| ||||| ||| | |||| ||| | ||||||||| Sbjct 56948 TGATGAGCAGCCACCCATGACAGACGAAACACCCAAACAG--CGCAAAACCCGCCTGGCA 57005 Query 9561 CGGGAACGCCAACGGGCGAAGCGCGAGCGCGA 9592 | || || |||| || ||||| ||||||| Sbjct 57006 TGCGAGCGTAAACGTGCCCAGCGCAAGCGCGA 57037 Score = 127 bits (140), Expect = 5e-25 Identities = 221/321 (69%), Gaps = 9/321 (3%) Strand=Plus/Plus Query 9839 AAAATCCACATCGCCAAGGCCCAGCTGGGCATGGACGATGACACCTATCGCGCATTGCTC 9898 || ||||||||||||||| | || || |||| || || ||||| || || ||| | Sbjct 57266 AAGATCCACATCGCCAAGAAGGACCTTGGGCTGGATGACGAAACCTACCGGGCCTTGTTG 57325 Query 9899 GCTCGCGTCGCGGGCGTGCGCTCGGCCAAGGACTTAGGGCCGCGCCAGATCGACCACGTA 9958 | ||||| ||||| ||||| |||||||| ||| | ||| |||||||||| | ||| Sbjct 57326 GGCCGCGTGGCGGGTGTGCGTTCGGCCAAAGACCTGACGCCACGCCAGATCGGCGCTGTA 57385 Query 9959 CTGGTCGAACTCCAGCGCCTGGGCTGG------AAACCGAAGAGCAACCGGCAAGGCCGG 10012 |||| ||| | ||| |||||||| ||||||| | || ||||||||| Sbjct 57386 CTGGCCGAGTTTGCCCGCTTGGGCTGGGAGTCTAAACCGACTAAAAA---GCAAGGCCGC 57442 Query 10013 GCGACGCCAAAAGTGCCGCAAAACCGGCAAACCGTGCTGCGTAAAATCACCGCGCTCCTG 10072 | || | | | ||| | ||||| || || || ||||||| || | || Sbjct 57443 AAGGGACCGATGGCGGCGCCAGACCGGGTAAAGCTGGTGGGTAAAATAGAGGCTTTTCTC 57502 Query 10073 GCCAGCGCCCATCGCCCCTGGAGCTACGCCGACCACATGGCCCGGCGCATGTTCCAGGTC 10132 ||| ||| | ||| ||||| || |||||| ||||||| |||||||||| ||||| Sbjct 57503 GCCGAGGCCAAACGCTCCTGGGCATATGCCGACGGTATGGCCCTGCGCATGTTCAAGGTC 57562 Query 10133 GAGCGGGTCGAGTGGCTGGAC 10153 ||||| || || ||||| ||| Sbjct 57563 GAGCGAGTGGAATGGCTAGAC 57583 Score = 86.0 bits (94), Expect = 1e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 6895 GCCTGGGGCGAGCGTCCGCCCGTCTTCGTCCAACTGCTGGCCGCCGAGGTGGCCCGCAGC 6954 || |||||| || |||| | ||||| | ||||| |||||||| || || || | Sbjct 53731 GCTTGGGGCCAGGACGCGCCGTTGTTCGTACGCCTGCTCGCCGCCGAAGTCGCTGCCACC 53790 Query 6955 AGCCAGACGAAAGCCGGCGAGGCAATCGGCATGAGCCGTTCGACTGTCAGCACCATCCTC 7014 | | |||| || ||| || || |||||||||||||| || | |||||| | ||| Sbjct 53791 AACAAGACCAAGGCCAGCCAGCGTATCGGCATGAGCCGCACGGCCGTCAGCCTGACCCTT 53850 Query 7015 GCCAACCGCTACCCGTCACCCTCGACGATCCGCGTCGAGCGTCGTGTCCTGGCCGCGCTG 7074 |||||||||| |||| ||| | | | || ||||| || || ||| | ||| Sbjct 53851 TCCAACCGCTATGCGTCGCCCAGCATGGCGGGTGTTGAGCGGCGGGTAATGGAAACCCTG 53910 Query 7075 AGCCGCATTGAGTGCCCGGCCCTGGGCGAGGCGGTGACCTCGGTCGAGTG 7124 | |||||||| || ||||||| |||| | || ||| ||| | |||| Sbjct 53911 GGGCGCATTGAATGTGTCGCCCTGGACGAGACCGTTACCACGGACCAGTG 53960 >seq9928 Length=455 Score = 104 bits (114), Expect = 6e-18 Identities = 247/371 (67%), Gaps = 2/371 (1%) Strand=Plus/Plus Query 13973 CGCCGCCAGATCGAGGCCGAGGTCGCAGGCTTCGACCCCGACC-CGAAGGCCAGCGCCGT 14031 ||||||| | |||||||||| || ||||||| |||||| || || | | | | Sbjct 86 CGCCGCCTGGTCGAGGCCGAATGCGATGGCTTCGCGACCGACCACGCAGCGC-GTGACCA 144 Query 14032 CCGGCGTGAACGGGCTAGCGCGGACTACGAGTATTTCGCCCGTACCTACTTCCCGCACTA 14091 || ||| ||||| | |||||||||| ||| || ||||| ||||| ||||| Sbjct 145 GCGCCGTACCCGGGCGCAGACCGACTACGAGTTCTTCTGTCGCACCTATTTCCCTCACTA 204 Query 14092 CGTGAAGCGCGGTAACGCGCTGCTGCACGACTACCTCTACAAGCGGTTACCCGAGCTGGT 14151 ||||||| ||| ||||| | || || ||||| | | |||| ||||| Sbjct 205 CGTGAAGAGCGAGGCATCGCTGTTCCATCGCTGGTTCTACGACACCGTGCCCGGCCTGGT 264 Query 14152 GGACCACCCGGACGGCCAGCACGAAGCCATTGCGGCGCCGCGTGGTAATGCCAAGTCCAC 14211 || || || || |||| | | || |||| || |||||| | || |||||||| Sbjct 265 CGATCAACCCACGGGGCAGCTCATCGAGATCTCGGCCCCACGTGGTGAGGCGAAGTCCAC 324 Query 14212 CCTGGTGAGCCAGATATTCGTGATCTGGTGCGTACTCACCGGCCGCAAGCATTACCCCCT 14271 ||| | | ||| | ||| | | ||||| || | |||| ||||||| | | | Sbjct 325 CCTCGGTACGCAGCTCTTCACGCTTTGGTGTGTGGTGACCGAGCGCAAGCGATTCATTCC 384 Query 14272 GATCATCATGGATGCCTTCGAACAGGCCGCCACGATGCTGGAAGCGATCAAGGCGGAGCT 14331 | | | ||||| |||||| |||||||| || |||||||| || |||||| ||||| Sbjct 385 GCTGGTGATGGACAGCTTCGACCAGGCCGCGACCATGCTGGAGGCCGTCAAGGTCGAGCT 444 Query 14332 GGAGTTCAACC 14342 |||| ||||| Sbjct 445 GGAGAGCAACC 455 >seq215 Length=48791 Score = 98.7 bits (108), Expect = 2e-16 Identities = 169/241 (70%), Gaps = 11/241 (5%) Strand=Plus/Plus Query 11530 AACCTCGCGGCATCCGCAACAACAACCCCGGCAACATCGTTTGGTCGGCACG--CAACAA 11587 |||| ||||| | |||||| ||| ||||||||||||| || || | || |||| | Sbjct 37186 AACC-CGCGGGGTGCGCAACCGCAATCCCGGCAACATCGATTA--CGTCCCGGCCAACCA 37242 Query 11588 CTGGCAGGGCCAGCTCCCGCACAACCCGAAGATCGAGCCCCGATTCGCCCGCTTCGACAC 11647 ||||| ||||| || | ||||| || ||| || || ||||| || || || Sbjct 37243 ATGGCAAGGCCAACTGAAACCAGACCCGGCTATAGAGAAACGCTTTGCCCGGTTTGATAC 37302 Query 11648 CGCGCATAACGGCATCCGCGCCCTGGCAAAGCTGCTGCTGAACTAT---CGCAAGGTCCA 11704 || | ||||||||||| ||||||| ||||||||||||| |||| |||||| || Sbjct 37303 GCCGGAAAACGGCATCCGTGCCCTGGGCAAGCTGCTGCTGACCTATCAGCGCAAG---CA 37359 Query 11705 CGGCCTGCGCACCGTCGAATCGTTGATCGCACGCTGGGCGCCATCCAACGAGAACGACAC 11764 ||| | ||||| | || | ||| ||||||||||| ||| |||||||| || Sbjct 37360 CGGGTTAAAGACCGTGAAGGCGATCATCAGTCGCTGGGCGCCGTCCGTGGAGAACGATAC 37419 Query 11765 C 11765 | Sbjct 37420 C 37420 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117890790395070