Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq48 131 2e-25 seq593 120 3e-22 seq420 107 2e-18 seq456 104 2e-17 seq79 86.0 6e-12 >seq48 Length=44992 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | |||||||| |||||||| ||||| ||| || |||||| ||| || Sbjct 22612 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCG 22553 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || || || |||| | || || |||||||| || || || |||||||| | Sbjct 22552 AGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22493 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | | ||||||||| | ||| | || ||| Sbjct 22492 ATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTG 22433 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || ||||| || || |||||||||||| Sbjct 22432 CCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 102 bits (112), Expect = 8e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| |||||||| ||||| || | ||||| ||| || Sbjct 22840 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 22781 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || |||||| | || | || || |||||||| || || || |||||||| Sbjct 22780 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 22721 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| ||||| ||| ||| || | | ||| || || | || | || || Sbjct 22720 ATCTTGGTCTTGACGTTGT-CGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTT 22662 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || ||||| ||||| ||||||||||| Sbjct 22661 GCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | |||||||| |||||||| || || ||| Sbjct 22402 CCACCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGAT 22343 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || || || ||||| || |||| | || ||||||||||| || Sbjct 22342 AGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGA 22283 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 |||||||||||||| || || ||| | | |||| ||| || | | |||||| Sbjct 22282 ATGCCCTCCTTGTCTTGAATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACC 22223 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || |||| || || ||||| |||||||| Sbjct 22222 TCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 >seq593 Length=58250 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | || ||||| |||||||| ||||| ||| | || ||| ||| || Sbjct 29813 ACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCG 29754 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || ||||| || |||| | || || |||||||| || || |||||||||||| | Sbjct 29753 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGG 29694 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | | |||||| || | ||| | || ||| Sbjct 29693 ATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTG 29634 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| |||||||| || ||||| Sbjct 29633 CCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 >seq420 Length=40905 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | |||||||||||||| || ||||| || | ||||| ||| || Sbjct 13337 ACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCA 13396 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || ||||| |||| | ||| ||||| ||||| || || || |||||||| | Sbjct 13397 AGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGG 13456 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | |||| |||||| | | ||| || || | ||| | || || Sbjct 13457 ATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTT 13516 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || ||||| || || ||||||||||| Sbjct 13517 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 93.3 bits (102), Expect = 4e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||||||||| || ||||| || | ||||| ||| || Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || || || |||| | || || |||||||| || || |||||||| || Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 127025 ATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 || || ||||| |||| |||| ||| || | | ||| || || | ||| | || || Sbjct 13685 ATCTTGGTCTTGACGTTG-TCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTT 13743 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || ||||| || || ||||||||||| Sbjct 13744 GCCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | || ||||| |||||||| ||||| ||| | |||||| ||| || Sbjct 13793 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCG 13852 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 || || || || || |||| | || || |||||||| || || || |||||||| | Sbjct 13853 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 13912 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||| | | |||| |||||| | | ||||| || | || | || || Sbjct 13913 ATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTTT 13972 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| ||| || || ||||||||||| Sbjct 13973 CCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 >seq456 Length=67341 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| ||||| || |||||||| | || ||| || || Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || ||||| || ||||||| || ||||||||||| || || ||||||||||| | Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || || ||||| | || | |||||| | | ||| || |||| ||| | || || Sbjct 21494 ATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTT 21553 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || || | ||| || ||||| ||||||||| Sbjct 21554 CCTGTTAAAGTCTTAACAAAGATCTGCATG 21583 >seq79 Length=127859 Score = 86.0 bits (94), Expect = 6e-12 Identities = 121/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 ||||| || | |||||||| ||||| || |||||||| | ||||| ||| || Sbjct 118830 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCC 118771 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 | || || || ||| ||||||| || ||||||||||| || || ||||||||||| | Sbjct 118770 AATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 118711 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGT 127074 || || ||||| | |||| ||| || | | ||| || |||| ||| Sbjct 118710 ATCTTAGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACCTCGAGGGT 118661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475417557641200