Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011703.1 Length=66235 Score E Sequences producing significant alignments: (Bits) Value seq60 98.7 4e-16 >seq60 Length=244765 Score = 98.7 bits (108), Expect = 4e-16 Identities = 136/190 (72%), Gaps = 9/190 (5%) Strand=Plus/Plus Query 5389 CCAACCAGTACCAGAGACTCGAAATCGAATCTATGATCGTGGATGGCCGAGTGATTGAAG 5448 || |||| ||| | ||| ||| | ||| | ||||||||||| || ||| | ||| Sbjct 233521 CCCACCAAGACCCGCGACATGAAGTTGAAGCGGTGATCGTGGATCGCGGAGCTTTCAAAG 233580 Query 5449 CAAAGCCGGCGCGGCAACTCCGGGTGCCAAACATGGAGGCGC------CCTGCCGGGAGC 5502 || |||||||| ||||| |||||||| ||||| |||||| ||| || ||| Sbjct 233581 CAGGCGCGGCGCGGTAACTCAGGGTGCCAGACATGCAGGCGCTGGTTGCCTTCC---AGC 233637 Query 5503 TGGACTTGAATGAACCCCAGGCCGTGCAGCGTGATCTTGTCCTTCATCGGGTCATGGACG 5562 ||||| || | || |||||||||||||| ||||||||||| |||| ||| | | | Sbjct 233638 TGGACCTGCACAAAGCCCAGGCCGTGCAGGGTGATCTTGTCGGTCATTACGTCGTCTATG 233697 Query 5563 GTGCTCATGG 5572 |||||| || Sbjct 233698 ATGCTCACGG 233707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 211791044075780