Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_011802.1 Length=41941 Score E Sequences producing significant alignments: (Bits) Value seq24 910 0.0 seq816 605 8e-169 seq1130 93.3 1e-14 seq2164 86.0 2e-12 >seq24 Length=857 Score = 910 bits (1008), Expect = 0.0 Identities = 623/702 (89%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 21630 GTGGCGGGGCTATTGCTATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 21689 ||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 21690 TGGAAGGTGTCAGATACAAACCATATAAGGACGTAGTCGGTGTGTTGACTGTGTGTTATG 21749 ||||||||||||| |||| |||||| || || | || ||||| | |||||| ||| | | Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 21750 GCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAAGCCC 21809 | || || |||||||||||||||| ||||||||||||||| |||||||||||||||||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 21810 TCCTGAATAAAGACCTTATCACTGTCGCCAGACAAATTAACCCGTACATCAAAGTAGATA 21869 ||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 21870 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAATGTGGGCGCAGGCAATT 21929 ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 21930 TCAGAACATCGACGCTTCTTCGCAAAATCAATCAGGGTGATATCAAAGGTGCATGTGATC 21989 |||||||||||||||||||||||||||| || ||||| ||||||||||| |||||||||| Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 21990 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGCCTGATGACTCGTCGTG 22049 ||||||||||||||||||| ||||||||||||||||||||||| || ||||||||||||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 22050 AGGTTGAGCGTGATGTCTGTTTGTGGGGTAAGCAATGAGCAGATTAACCTCGATTATCTC 22109 || |||||||||| |||||||||||||| |||||||| |||| ||||| |||||||||| Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 496 Query 22110 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTATCGTGATAA 22169 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 497 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 556 Query 22170 CGCCATCACCTACAAAGTCCAGCGCGACACTGTTACTCAAAAGCTGGCGCTGGCGAACGC 22229 |||||| |||||||||| ||||||||||| | | | | ||| |||||||||||| Sbjct 557 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 616 Query 22230 GACAATTACCGATATGCAAACGCGCCAGCGTGATGTAGCAGAACTTGACGCCAGATACAC 22289 | ||||||| || ||||| | ||||||||||||||| || | ||| || | | |||||| Sbjct 617 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 676 Query 22290 AAAGGAGCTTGCTGATGCGAAAGCTGAGAATGATGCTCTTCG 22331 |||||| | ||| ||||||||||||| ||||||||||| || Sbjct 677 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 718 >seq816 Length=14434 Score = 605 bits (670), Expect = 8e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Minus Query 13000 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13059 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 5884 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 5826 Query 13060 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13119 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 5825 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 5766 Query 13120 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13179 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 5765 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 5706 Query 13180 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13239 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 5705 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 5646 Query 13240 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13299 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 5645 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 5586 Query 13300 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13359 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 5585 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 5526 Query 13360 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13419 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 5525 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 5466 Query 13420 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13478 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 5465 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 5406 Query 13479 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13534 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 5405 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 5348 Query 13535 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13594 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 5347 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 5288 Query 13595 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13654 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 5287 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 5228 Query 13655 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13714 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 5227 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 5168 Query 13715 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13774 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5167 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 5108 Query 13775 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13834 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 5107 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 5048 Query 13835 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13894 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 5047 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 4988 Query 13895 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 13954 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 4987 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 4928 Query 13955 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14013 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 4927 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 4869 Query 14014 CGTCCTGA 14021 ||||| || Sbjct 4868 CGTCCCGA 4861 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 4624 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4683 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 4684 GTT--TGTT-ATTGCTGC 4698 | | |||| |||||||| Sbjct 11190 GATGCTGTTCATTGCTGC 11173 >seq1130 Length=54118 Score = 93.3 bits (102), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 26340 TTTGAAGAGTTCCGCCTATATCATCGCGATGAGAACGGCAAGATTGTCAAGACCAACGAT 26399 ||||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 26400 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 26447 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3027 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3078 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 134067299642430