Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq593 104 2e-17 seq456 82.4 7e-11 >seq593 Length=58250 Score = 104 bits (114), Expect = 2e-17 Identities = 163/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| || || | | || | ||| || || ||||||||||| || || || ||| Sbjct 29606 ATACCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCG 29547 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | ||| ||||| ||| | || | || ||| || || || Sbjct 29546 GAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGT 29487 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || ||||||| | || || | | | | || | |||||| || ||| Sbjct 29486 GGAATTCCTTCCTTGTCTTGAA-TCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTC 29428 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||| | ||||| || ||||| || || || |||||||| |||||||| Sbjct 29427 GACTTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 >seq456 Length=67341 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||||||||| || ||||| | ||| | || |||||||| Sbjct 21380 TGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCCAATTGC 21439 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| || | ||||| |||||||| || || || || || || || ||||| || || Sbjct 21440 TTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTTG 21499 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 |||| || | |||||| || ||| || ||||| || | || || || ||| Sbjct 21500 GCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTTCCTGTT 21559 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 | ||| || ||||| || ||||| Sbjct 21560 AAAGTCTTAACAAAGATCTGCAT 21582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451924071189800