Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_012743.2 Length=62715 Score E Sequences producing significant alignments: (Bits) Value seq737 140 1e-28 seq685 116 1e-21 >seq737 Length=22238 Score = 140 bits (154), Expect = 1e-28 Identities = 182/249 (73%), Gaps = 12/249 (5%) Strand=Plus/Plus Query 9110 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 9169 ||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||| ||| Sbjct 8033 CATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCG 8092 Query 9170 CTACCTCCCGAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAA 9229 |||| | || ||||||||||| ||| |||| ||| | || || ||| ||||| Sbjct 8093 CTACATGCCTAGCGGCGACGCGATCGCCAACATCGCCGTGGCCAC-----TTCG-TACAA 8146 Query 9230 GGACAAGG--CG----AGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTT 9283 | |||| || | ||||| || ||| |||| ||||||||||| | | || Sbjct 8147 GTCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGCACCGTATTTCGTT 8206 Query 9284 CTTCGGCCGCCTCGCCGAGATCGTCGACGAGCACCTTCGCAAGGGCGCATCGGTCTACAT 9343 |||||||||||| || || ||||||| | || |||| || || | || |||||| | Sbjct 8207 CTTCGGCCGCCTGGCGGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCGTCCGTCTACGT 8266 Query 9344 CGAGGGGCG 9352 ||| || || Sbjct 8267 CGAAGGCCG 8275 >seq685 Length=77197 Score = 116 bits (128), Expect = 1e-21 Identities = 210/303 (69%), Gaps = 7/303 (2%) Strand=Plus/Plus Query 9119 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 9178 |||||||||||| || ||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 10559 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 10618 Query 9179 GAGCGGCGACGCAATCTCCAATATCCGTCTCGCGACGACCGATCGCTACAAGGACAAGGC 9238 || |||| |||| | | || || || || || | ||| ||| || || ||| Sbjct 10619 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 10678 Query 9239 GAGCGGCGAGTTCAAGGAAGTGACCGAGTGGCACCGCGTCGCTTTCTTCGGCCGCCTCGC 9298 || |||| || |||| ||||||||||||||||| | ||||||||| |||| Sbjct 10679 GACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGC 10738 Query 9299 CGAGATCGTCGACGAGCACCTTCG-CAAGGGCGCATCGGT-CTACATCGAGGGGCGCATC 9356 ||| |||| | ||| | || || ||||| || | || |||| |||| || || Sbjct 10739 CGAAATCGCGGGTGAGTATCTGCGAAAAGGGAGC--CAGTGCTACGTCGAAGGCACTCTC 10796 Query 9357 AAGACGCGGAAGTGGCAGGATCAATCCGGCCAGGATCGCTACACGACCGAGATCGTCGCC 9416 || || |||| ||| || ||| | | |||||||| ||||||||||||| | Sbjct 10797 CGCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCGTC 10853 Query 9417 GAC 9419 ||| Sbjct 10854 GAC 10856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 200528966682180