Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_013055.1 Length=39896 Score E Sequences producing significant alignments: (Bits) Value seq909 297 5e-76 seq29 174 4e-39 seq1910 147 6e-31 seq6650 86.0 2e-12 seq685 80.6 7e-11 >seq909 Length=21192 Score = 297 bits (328), Expect = 5e-76 Identities = 568/826 (69%), Gaps = 17/826 (2%) Strand=Plus/Plus Query 8305 ATGCAGCCAGCGTTGACGCGTGTGGTCGAGCGCATCGACGAGCTGTTTCACCGCGAGGAC 8364 || ||||| | |||||| |||||||||||||||||||| |||| |||||| || Sbjct 7184 ATCCAGCCTTTGCTGACGCAGGTGGTCGAGCGCATCGACGAACTGTACAGCCGCGACAAC 7243 Query 8365 CGCGGCGGGATCACCGGAACGCCGACCGGATTTGTCGACTTAGAC-GCGCGACTCGACGG 8423 | | | ||||| || ||| ||||| || ||||| | ||| || ||| | ||| Sbjct 7244 CAGAGTGAAATCACGGGCGTGCCCACCGGTTTCATCGACCTCGACCGCATGAC-CTCCGG 7302 Query 8424 TATGCATGGCGGTGAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCT 8483 | |||| || || || | ||||| | ||||| ||||||||||| ||||| | | Sbjct 7303 TCTGCAGCCGGGCGACCTGGTGATCGTGGCGGGACGTCCGTCGATGGGCAAGACGGCGTT 7362 Query 8484 CGCAATGAATATCGCAGAGCATGTCGCCATCGTGTCGAGATTGCCCGTCGGCGTCTTGTC 8543 | | || |||| || | || ||||||| | |||||||| | ||| || || Sbjct 7363 TTCCGTCAACATCGGCGAAAACGTGGCCATCGACAGCGGCTTGCCCGTGGCCGTGTTCTC 7422 Query 8544 GCTGGAAATGCCGACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAG 8603 | |||| ||| || ||| || ||||||| ||||| | || | || | | | | Sbjct 7423 GATGGAGATGGGCGGCGCCCAGCTGGCCATGCGTATGCTCGGCTC--CGTCGGGCAGCTG 7480 Query 8604 --CCAAAACAGGCTGCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGT 8661 ||| || | ||||| || || ||||| | || || |||||||||||||||||| | Sbjct 7481 GACCAGCACCGCCTGCGCACGGGCCGCCTGAACGACGAAGACTGGCCGCGCCTGACGAAT 7540 Query 8662 GGCGTCGAGCTGATGGCCGACGCGCCCGTGCATATTCTCGAT--AGCTCCG-CGATCACC 8718 | || || |||| |||||||| || | || |||| | | ||| || | | | Sbjct 7541 GCGATCCAGAAGATGAACGACGCGCAGCTGTACAT---CGATGAAACGCCGGCGCTGAAC 7597 Query 8719 CCG-TCGAAATTCAAGTCCGAGTTGCGGCGCTTGTATCGCGAATGCGGCCGGCTCGGGAT 8777 || ||||| | | | ||| | ||| || |||| ||| | |||||| ||| || | Sbjct 7598 TCGATCGAATTGCGCGCCCGC-TCGCGCCGTTTGTCGCGCCAGTGCGGCAAGCTGGGCCT 7656 Query 8778 GATTGTCGTTGACTACCTGCAGCTGATGTCGGGTGACGGCGGCGGATCTGAAATGCGGGC 8837 ||| |||| || ||| ||||||||||||||| | | || || | || || Sbjct 7657 GATCATCGTCGATTACTTGCAGCTGATGTCGGCCAATACCCCGGGC---GACAACCGCGC 7713 Query 8838 CACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCC 8897 ||| ||| | |||| || ||||| | | ||| | || || ||||||| | || Sbjct 7714 CACGGAGATTTCCGAGATTTCGCGGGGCTTGAAAGGCCTGGCAAAAGAACTCGGCTGCCC 7773 Query 8898 GATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGT 8957 | ||||||||||| ||||| || || ||| || | ||||| || || || ||||| Sbjct 7774 CGTGATCGCGCTGTCCCAGCTGAACCGCTCGCTGGAACAACGCCCGAATAAACGTCCCGT 7833 Query 8958 CATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTAT 9017 |||||||| ||||||| ||||| || |||||||||||||||||||||||||| || || Sbjct 7834 GATGTCCGACTTGCGCGAATCGGGCGCTATCGAGCAGGATGCCGACGTGATCCTGTTCAT 7893 Query 9018 CTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCAT 9077 |||||||| ||||| |||||||||||| |||| || ||||||||||||||||| Sbjct 7894 TTACCGCGACGAGGTGTATAACCCCGACTCGCCAGACAAGGGAACGGCCGAAATCATCAT 7953 Query 9078 TGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACGGCTCGCATTC 9123 | || || || ||||| || || |||| | | || ||| | ||| Sbjct 7954 CGGTAAACAACGTAACGGTCCAATCGGCAGCATCCGCCTCACCTTC 7999 >seq29 Length=371730 Score = 174 bits (192), Expect = 4e-39 Identities = 456/683 (67%), Gaps = 22/683 (3%) Strand=Plus/Plus Query 8437 GAGTTGATTATCGTCGGCGGACGGCCGTCGATGGGAAAGACCTCCCTCGCAATGAATATC 8496 || ||||| ||||||| ||| || ||||| ||||| || ||| || |||| ||||| | Sbjct 205770 GACTTGATCATCGTCGCCGGCCGTCCGTCCATGGGTAAAACCACCTTCGCCATGAACCTG 205829 Query 8497 GCAGAGCATGTCGCCAT-CGTGTCGAGATTGCCCGTCGGCGTCTTGTCGCTGGAAATGCC 8555 | || | | || | || ||| | ||| | | || | || ||||| ||||| Sbjct 205830 GTGGAAAACGCCGTGTTGCGCAGCGACAAGGCCGTACTG-GTTTATTCCCTGGAGATGCC 205888 Query 8556 GACCGAACAGTTGACCATGCGCATGCTGGCGTCGACATCCCGTATCAGCCAAAACAGGCT 8615 |||| | ||| |||||| ||| || |||| ||| ||| ||| | || | | Sbjct 205889 AGGCGAATCGCTGATCATGCGTATGTTGTCGTCCCTGGGCCGCATCGACCAGACCAAGGT 205948 Query 8616 GCGAACCGGTCGCCTCGAGGATGACGACTGGCCGCGCCTGACGCGTGGCG-TCGAGCTGA 8674 ||| |||||||||| || || ||||| |||||||| ||||| | |||| || | ||| Sbjct 205949 GCGTGCCGGTCGCCTGGAAGACGACGATTGGCCGCGGCTGAC-CTCGGCGGTCAACCTGC 206007 Query 8675 TGGCCGACGCGCCCGTGCATATTCTCGATAGCTCCGCG---ATCACCCCGTCG-AAATTC 8730 | | ||| | | || || ||||| | ||||| |||| ||||||| |||| | Sbjct 206008 T---CAACGATCGCAAGCTGTTTATCGATGACACCGCGGGCATCAGCCCGTCGGAAATGC 206064 Query 8731 AAGTCCGAGTTGCGG-CGCTTGTATCGCGAATGCGGCCGGCTCGGGATGATTGTCGTTGA 8789 | || || | | ||| || || || |||| | | |||| | | || Sbjct 206065 GCG--CGCGTACCCGACGCCTGGTGCGTGAGCACGGCGATATTGCCCTGATCATGATCGA 206122 Query 8790 CTACCTGCAGCTGATGTCGGGTGACGG----CGGCGGATCTGAAATGCGGGCCACCGAGG 8845 |||||||||| ||||| | | | ||| | |||| ||| | ||| ||| |||| Sbjct 206123 CTACCTGCAGTTGATG-CAGATCCCGGGCTCCAGCGG---TGACAGCCGGACCAACGAGA 206178 Query 8846 TCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATCG 8905 | |||| || || ||| | | ||| | || |||||| || || ||| | | | Sbjct 206179 TTTCCGAGATTTCCCGCTCGTTGAAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTTG 206238 Query 8906 CGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCATGTCCG 8965 | ||||||||||| || ||| || ||| | || || ||||| || || ||| |||| Sbjct 206239 CCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCCGATCAACTCCG 206298 Query 8966 ATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACCGCG 9025 | |||| || || || ||||||||||||||||| ||||||||| | || | ||||| | Sbjct 206299 ACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTTCGTATACCGGG 206358 Query 9026 ATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATCATCATTGCGAAGC 9085 | ||||| ||| |||| || | || || || | || |||||||| || | || | Sbjct 206359 ACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCATTATCGGTAAAC 206418 Query 9086 AGCGAAACGGGCCGATTGGCACC 9108 |||| |||||||| || |||||| Sbjct 206419 AGCGTAACGGGCCAATCGGCACC 206441 >seq1910 Length=22743 Score = 147 bits (162), Expect = 6e-31 Identities = 201/281 (72%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 8833 CGGGCCACCGAGGTCGCCGAAATATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGAC 8892 ||||||| ||| || |||| || || || ||||||| | | || || ||| | | Sbjct 793 CGGGCCAACGAAGTATCCGAGATTTCCCGATCACTCAAGGCATTGGCCAAAGAAATGGGA 734 Query 8893 GTTCCGATCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGG 8952 || | || ||||| || || | ||||| ||| |||| || || || || || Sbjct 733 TGCCCAGTAATTGCGCTATCTCAATTAAATCGGTCGCTTGAGACACGTCCGAATAAACGA 674 Query 8953 CCCGTCATGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTC 9012 || |||||||| ||||| || ||||| || || || ||||||||||||||||| ||| | Sbjct 673 CCAGTCATGTCTGATCTCCGAGAGTCCGGAGCCATTGAGCAGGATGCCGACGTCATCATT 614 Query 9013 TTTATCTACCGCGATGAGGTCTATAACCCCGACAGCGCAGATCGCGGTACGGCCGAAATC 9072 || | |||||||| ||||| |||||||| ||| || ||| || || ||||| | Sbjct 613 TTCCTTTACCGCGACGAGGTGTATAACCCGGACTCCGAAGAGAAGGGGACTGCCGAGGCC 554 Query 9073 ATCATTGCGAAGCAGCGAAACGGGCCGATTGGCACCGTACG 9113 |||||||| || ||||||||||| || || || | ||| || Sbjct 553 ATCATTGCAAAACAGCGAAACGGCCCTATCGGGAGCGTTCG 513 >seq6650 Length=479 Score = 86.0 bits (94), Expect = 2e-12 Identities = 135/187 (72%), Gaps = 6/187 (3%) Strand=Plus/Minus Query 8846 TCGCCGAAAT-ATCGCGCGCACTCAAACAAATTGCGAAGGAACTCGACGTTCCGATCATC 8904 || ||||||| | | || || |||||| ||| ||||||||| || ||||||||| Sbjct 403 TCACCGAAATCACCACGGGC-CTCAAAGCGCTTGGCAAGGAACTCAACACGCCGATCATC 345 Query 8905 GCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA--TGT 8962 |||||||| ||||| || | | || | ||| | ||||||| |||| || | | Sbjct 344 GCGCTGTCACAGCTCTCCCGTCAGGTGGAAAGCCGCGAAGACAAGCG-CCCG-CAGCTCT 287 Query 8963 CCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCTACC 9022 |||| ||||| || || || ||||||||||||| ||||||||| | |||| | || | Sbjct 286 CCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTATC 227 Query 9023 GCGATGA 9029 |||| || Sbjct 226 GCGACGA 220 >seq685 Length=77197 Score = 80.6 bits (88), Expect = 7e-11 Identities = 106/147 (72%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 8900 TCATCGCGCTGTCGCAGCTTAATCGAGGGCTCGAGAATCGCCCAAACAAGCGGCCCGTCA 8959 |||||||||| |||||| | || | ||| | || || |||||||| || || | Sbjct 14330 TCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGA 14271 Query 8960 TGTCCGATCTGCGCGAGTCGGGTGCGATCGAGCAGGATGCCGACGTGATCCTCTTTATCT 9019 | || |||| ||||| || |||||||||||||| || ||| | ||| | || ||| Sbjct 14270 ACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCT 14211 Query 9020 ACCGCGATGAGGTCTATAACCCCGACA 9046 | || || |||||||| ||||| |||| Sbjct 14210 ATCGAGACGAGGTCTACAACCCGGACA 14184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127524387970980