Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq404 223 4e-53 seq371 113 6e-20 seq1565 95.1 1e-14 seq689 95.1 1e-14 seq47 84.2 3e-11 >seq404 Length=78127 Score = 223 bits (246), Expect = 4e-53 Identities = 629/960 (66%), Gaps = 26/960 (3%) Strand=Plus/Plus Query 116416 ACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTG 116475 ||| |||| || ||||| || || || || || ||||| | || || | ||| Sbjct 48950 ACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTG 49009 Query 116476 TACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTT 116535 || | | ||| || || || | || || | || |||||||| | |||| ||| ||| Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 116536 GACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGAC 116595 ||||| | || || || ||||||||||| |||||||| || || ||||| | || ||| Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 116596 TTGAGAATAGCCTTCCATACATC---GGC-------GGCTGGC-ACAGTGGCGTTGGCTC 116644 | || ||| | ||| | ||| ||| | || || || | | | | || | Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTGATGGTCTTGCGACCGAGACCTGGGGTG 49189 Query 116645 GCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAG 116703 ||| ||||| |||||||| || ||||| || ||| |||| || | | Sbjct 49190 GCC--------TCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCC-CAGCAATCAGCG 49240 Query 116704 AGCCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTC 116763 || ||||| |||| | ||||| ||||| | ||| | | |||| || |||| | Sbjct 49241 AGACCTGGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCC 49300 Query 116764 ATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCC 116823 || ||||| || | | |||||| || | ||||| || || || ||||| | Sbjct 49301 ATAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTT 49360 Query 116824 CCCTGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTAC 116883 || || || || | || | || ||||||| ||| |||||||| || || ||||| Sbjct 49361 CCGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAG 49420 Query 116884 ACCGCGATTGACCCCTTGCGA---CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTA 116940 | || | | |||||||| | ||| | |||| || || | || || |||| Sbjct 49421 ATGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTG 49480 Query 116941 AATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGAC 117000 || ||||||||||| |||| || ||| | ||| || || || || || ||| || Sbjct 49481 AACACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATATGAA 49540 Query 117001 TTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGT 117060 | || | || | ||||| | |||||| || || ||| |||| ||||| | Sbjct 49541 CGGGCAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAGG 49600 Query 117061 GCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTT-ATTTGCGATGAG 117119 ||||| | | |||| | ||||||| ||||||||||||||| |||| || || || || Sbjct 49601 GCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTG-GACAAG 49659 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 |||||| ||||||||||||| || || | ||| ||||||||||| || ||||| Sbjct 49660 GAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTG 49719 Query 117180 GATGAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCC 117239 | | || | ||||| | || || |||||||| | | ||| | |||||| | || Sbjct 49720 GGTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCC 49779 Query 117240 GTGAATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATC 117299 ||| ||||| | ||||| ||||| | ||||| ||||| || || | || | || Sbjct 49780 GTGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTC 49839 Query 117300 GAGCCTCTGGAGGTAACTCTTCTCCAAGGTCTTGAGACCAAAATAGCCAAAGTCATAGTC 117359 || | || | ||| |||||||||||||| |||||| || | | ||| |||| Sbjct 49840 GATGCGGTGCAAGTAGGAACGCTCCAAGGTCTTGAAGCCAAAAAAGTCGTACTCAAAGTC 49899 >seq371 Length=37358 Score = 113 bits (124), Expect = 6e-20 Identities = 278/417 (67%), Gaps = 15/417 (4%) Strand=Plus/Minus Query 12695 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 12754 ||||| ||||| || | ||| || || ||||| || | ||| || | ||| || || Sbjct 20542 GATCTGGCGATCGAATCTACCGGGCCGCAGGAGAGCATTGTCGAGTACATCGGGACGATT 20483 Query 12755 CGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAGCCATCCATCTCAGTCAAGAG 12814 || | || | ||||| | || | | || |||| ||||||||||| |||||| Sbjct 20482 GGTACCGGCAAACACAACAACACCTTCGTTGCTACCGAATCCATCCATCTCTACCAAGAG 20423 Query 12815 TTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATACCACCCGCACTGCGTTGCTT 12874 |||||||| || | || ||||| ||||| | | | || || || | | ||| Sbjct 20422 TTGATTGAGTGTATTCTCGCGTTCGTCATT---GTGGAAGCCGCC---ACGGGAT--CTT 20371 Query 12875 -----ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCA 12929 ||||||||| ||||| ||||| ||||| | ||| | || ||| || || || Sbjct 20370 GAACGACCGACGGCATCAATCTCGTCGATGAATATGATTGATGGAGCATTCTCGCGAGCC 20311 Query 12930 ACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTG 12989 ||| ||||| ||| || || | | | ||| ||||| ||||||||||| | |||| Sbjct 20310 TCTTTAAAGAGATCACGGACACGCGATGGACCAACACCGACAAACATCTCGATGAAATCC 20251 Query 12990 GCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAG 13048 | | | | || | || |||||| ||| || ||||| || |||| |||||| | Sbjct 20250 GATCCAG-AGATGGTGAAGAAGGGCACGCCAGACTCACCAGCAGTGGCCTTGGCGAGCAA 20192 Query 13049 GGTCTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACC 13105 |||||| || || ||||| || | |||| |||||| |||||| ||||||| Sbjct 20191 GGTCTTGCCAGTGCCTGGAGGGCCAACAAGAATGGCACCCTTGGGGATCTTGGCACC 20135 >seq1565 Length=26367 Score = 95.1 bits (104), Expect = 1e-14 Identities = 254/380 (67%), Gaps = 20/380 (5%) Strand=Plus/Minus Query 176600 AGGAGGGATGGCCAGAAGTAGTGGATCATATTGAGGATGAGACCCTTAATGTGTGAACCA 176659 ||||| |||||||| |||| ||||| | ||||| || |||||||| ||||| |||||| Sbjct 8016 AGGAGCGATGGCCAAAAGTGATGGATGAGATTGATGAGCAGACCCTTGATGTGGGAACCA 7957 Query 176660 TCGTTATCCGCATCCGTCATAATCATGAGCCGACCATAGCGAAG---CTCGGAAACATCT 176716 |||| ||| ||| ||||||||||| | |||| || || || || | || || Sbjct 7956 TCGTGATCTTGATCAGTCATAATCATCAAATGACCGTATCGCAGAGACTTG---ACGTCG 7900 Query 176717 TGATAATCCTTACCTTGTTGAAGACCCAAAATCTTCTTGAGATCATTG---AACTCTTGG 176773 | || ||||| ||||| || |||| || | |||| | ||| | ||||| | Sbjct 7899 TCGTATTCCTTCTTGTGTTGCAGTCCCATAA---TGTTGACAATGTTGGTAATCTCTTCG 7843 Query 176774 TTTG-ATGTGAGTTGCGC--CACTGAAGCGTCGCGGACATTTTTACACTTCCCGCGGAGA 176830 || | | || | ||| | ||| | || || ||||| || || | || Sbjct 7842 TTGGCCAGCAAGATACGCATCTCTGTA---TCACGCACATTCAATGGTTTACCTCTAAGT 7786 Query 176831 GGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACTGCGAGGGTCTTC 176890 ||||| || ||||| ||||| ||||| | || | ||| || || || ||||| Sbjct 7785 GGGAAGCATCCATAGTGGTCACGTCCAACGATCGATATACCGGCGGTGGCCAGTGTCTTG 7726 Query 176891 GCGGAATCACCCTCCGTCACGATGAGCGTACACTTTCCAGA-TTGTGCCGTCCCCGCCTT 176949 || ||||| ||||| || | |||||||| || | |||| |||| || || || || Sbjct 7725 GCCGAATCTCCCTCTGTTAGAATGAGCGTGCAGTCCTCAGACTTGT-TGGTTCCGGCATT 7667 Query 176950 GTTCGCATCGTCCAACTTGG 176969 ||| || ||||| | ||||| Sbjct 7666 GTTGGCGTCGTCGAGCTTGG 7647 Score = 84.2 bits (92), Expect = 3e-11 Identities = 140/199 (70%), Gaps = 10/199 (5%) Strand=Plus/Minus Query 175978 ATTGATATTGTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGTATCC-GCGAGGG 176036 |||||| ||||||||||| | |||||| | |||| | |||| | || |||| Sbjct 8702 ATTGATGTTGTTTGAGCCAACATAGTCTTGTGCCA---TACCAATGATGGCCTGCGA--C 8648 Query 176037 AGACT----TCACCGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCC 176092 | ||| || || || ||||| ||||||| |||| ||| || | |||||| ||| Sbjct 8647 AAACTCATCTCTCCATGGTGGTATGCCGACTGCTCCGACACGTATCCAATCAACTGAGCC 8588 Query 176093 ACCTTCATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAA 176152 || | ||||| | ||| ||||| | | |||||| | ||||| | ||||||||| || Sbjct 8587 ACTCTAATCTCCTTCTTTAGGTTTCTCTTGAAGCAAGAATACAAAATCTTTCTCTGCGAT 8528 Query 176153 GGCTTGAGGCCGTCGGCCA 176171 | |||||| || ||| ||| Sbjct 8527 GTCTTGAGTCCATCGACCA 8509 >seq689 Length=46727 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/226 (69%), Gaps = 3/226 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| | ||| ||||||||| ||| | || || || ||| || |||| Sbjct 18312 GCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAAACCT 18253 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 ||||| | || |||||||| | ||| || || | ||| || |||||||| ||||| Sbjct 18252 GGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAAGATA 18193 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 ||||| || || ||||| | | |||||||||||| || ||| |||| | | Sbjct 18192 CCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGAATTTG---AGATC 18136 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCT 127745 || ||| ||||| | ||||| |||| || |||||| | |||| Sbjct 18135 CATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCT 18090 >seq47 Length=36934 Score = 84.2 bits (92), Expect = 3e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 12875 ACCGACGGCGTCAATTTCGTCAATGAAAACGATACACGGTTGATTTTCACGGGCAACTTC 12934 |||||| | |||||| ||||||||||| | |||||| ||| || | || ||| || Sbjct 33515 ACCGACAGAGTCAATCTCGTCAATGAATATGATACATGGTGCGTTCTTGCGAGCAGTCTC 33456 Query 12935 AAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 12985 ||||| || || || | |||||| |||||||| ||||||||||| |||| Sbjct 33455 AAAGAGCTCGCGGACACGCTTGGCGCCGACACCGACAAACATCTCTTCAAA 33405 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613399797895800