Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq689 100 5e-16 seq404 98.7 2e-15 >seq689 Length=46727 Score = 100 bits (110), Expect = 5e-16 Identities = 178/259 (69%), Gaps = 3/259 (1%) Strand=Plus/Minus Query 159917 AGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATG 159976 || || || |||||||||||||||| || ||||| || ||| ||||||||||| | | Sbjct 18321 AGCAGACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAG 18262 Query 159977 ATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA 160036 | | || ||||| | |||||| ||||||||||| || | ||| ||| Sbjct 18261 GTCAAACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAG 18202 Query 160037 AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTG 160096 |||||||| ||||| ||||| ||||||||||| | | ||| |||| || |||| Sbjct 18201 AAAAAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGA---CTTGGAA 18145 Query 160097 TCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACG 160156 | | |||| || ||||| ||||||||||| || || || || ||| | | Sbjct 18144 TTTGAGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATG 18085 Query 160157 GCGTTAAACAATCTGTCCT 160175 || || ||||| || ||| Sbjct 18084 GCATTGAACAAATTGGCCT 18066 >seq404 Length=78127 Score = 98.7 bits (108), Expect = 2e-15 Identities = 284/432 (66%), Gaps = 4/432 (1%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 ||||||||| || ||| | ||| ||| ||||||| || |||||||| | || | || Sbjct 49297 CTCCATAAAGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTC 49356 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAA 205284 | ||| ||||||| | ||| || | || | ||||||||||| ||||| | Sbjct 49357 CTTTCCGTGGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAG 49416 Query 205285 CCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGC 205344 | | ||| | || || | |||| || || ||||| || ||||| | | Sbjct 49417 GTAGATGGCAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTC 49476 Query 205345 GTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGC 205404 |||||| || || ||||| || || |||||||||| || ||||| |||| | ||| Sbjct 49477 GTTGAACACGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGATATA 49536 Query 205405 CGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGAT 205464 || | |||| | | ||| || || ||||| || || | |||||| ||| Sbjct 49537 TGAACGGGCAGCGCGGATCTTGTGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGAT 49596 Query 205465 CTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCA 205523 ||||||| | |||| || || |||||| || |||| || || ||| || | Sbjct 49597 GAGGGCGCATTGCTTG-AGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGA 49655 Query 205524 CCAGATAGCACGAAGCCAGCT-TGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGCTG 205582 | || ||||||| | || | |||| || |||||||| || ||||| || ||| || Sbjct 49656 CAAGGAAGCACGACGACATTTGTGGC-GAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTG 49714 Query 205583 GCGTGGCTGAAG 205594 |||||| | ||| Sbjct 49715 GCGTGGGTAAAG 49726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795015998142800