Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq1623 109 6e-19 seq48 104 3e-17 seq593 100 3e-16 seq420 100 3e-16 seq456 96.9 4e-15 seq355 93.3 5e-14 seq79 84.2 2e-11 >seq1623 Length=5066 Score = 109 bits (120), Expect = 6e-19 Identities = 163/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| ||| | ||| |||||||||||| ||||||||||| Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || | || || || ||||| ||||| || || | || || || |||| || Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||| |||||| |||| | || | | || || || | || Sbjct 222 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCC---TCA 278 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| |||||||| || || ||||| |||||||||||||||||||| Sbjct 279 ACCTCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCAT 328 >seq48 Length=44992 Score = 104 bits (114), Expect = 3e-17 Identities = 141/194 (73%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || || ||||||||||||||||| |||| ||||| ||||| ||||| || Sbjct 22367 CTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCGAGTTGCTTTCCGGCAAA 22308 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || ||||| |||| || | || ||||||||| ||||| |||| | | Sbjct 22307 GATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGAATCTTGGTCTTTACATT 22248 Query 46522 CGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | || || | || || || |||| |||||||| || || |||| || || | Sbjct 22247 GTCGATGGTATCAGATC-CCTCGACCTCCAGTGTGATGGTCTTTCCAGTCAATGTCTTGA 22189 Query 46581 CAAAGATTTGCATT 46594 ||||||| |||||| Sbjct 22188 CAAAGATCTGCATT 22175 Score = 102 bits (112), Expect = 9e-17 Identities = 142/194 (73%), Gaps = 4/194 (2%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||||||||||||||| | || ||||| |||||||| ||||| Sbjct 22139 CTCCTTTTGTATGTTGTAGTCGGATAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAA 22080 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || |||| || | | |||||||| |||||| |||||| ||| Sbjct 22079 AATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 22021 Query 46522 CG-CCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTA 46579 | | | || || | || || || || | |||||||| ||||| |||| || || Sbjct 22020 TGTCGATGGTATCAGATC-CCTCGACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTT 21962 Query 46580 ACAAAGATTTGCAT 46593 || || |||||||| Sbjct 21961 ACGAAAATTTGCAT 21948 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/230 (69%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| ||| | ||| ||||||||| || ||||||||||| Sbjct 22630 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGAC 22571 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || ||||||||||||||||| || || | | || || |||| || Sbjct 22570 AATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGG 22511 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 46543 | | |||||||| |||||| |||||| | | | ||||| || | || Sbjct 22510 ATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCC---TCG 22454 Query 46544 ACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || |||| ||||| || ||||| || || || || || || || ||||| Sbjct 22453 ACTTCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 87.8 bits (96), Expect = 2e-12 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 46358 TATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTG 46417 ||||||| ||||| | | ||| | |||| || | ||| ||||||||| || ||| Sbjct 22867 TATTATTGACCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTG 22808 Query 46418 TAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGG 46477 ||||| || || ||||| | || |||||||||||||| ||||| || | || || || Sbjct 22807 TAGTCAGAGAGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGA 22748 Query 46478 TCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTC-GC 46535 |||| || | | |||||||| ||||| |||||| ||| | | | || || | Sbjct 22747 TCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTGA-CGTTGTCGATGGTATCAGA 22689 Query 46536 TCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || |||| || || || ||||| || || || || || || || |||||| Sbjct 22688 TC-CCTCAACCTCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCATT 22631 >seq593 Length=58250 Score = 100 bits (110), Expect = 3e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| ||||| || | || ||||| ||||| ||||| || Sbjct 29796 CTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAA 29737 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || |||| || | | |||||||||| |||||| |||||| | Sbjct 29736 GATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATT 29677 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | ||||| || | || || |||| || || || ||||| || || || || Sbjct 29676 ATCGATGGTGTCAGAGCCC---TCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTT 29620 Query 46579 AACAAAGATTTGCAT 46593 |||||||||||||| Sbjct 29619 TACAAAGATTTGCAT 29605 Score = 93.3 bits (102), Expect = 5e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||| | ||| ||||||||| || |||||||| || || ||||| | || ||| Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| ||||| || || | || || || |||| || | | |||||||| | Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | | | | ||||| | || | | || |||| |||||||| || Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCT-CAACCTCCAAGGTGATGGTCTT 28951 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || |||||||||||||| Sbjct 28950 ACCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| || |||||||| || || ||||| | || ||||| ||||| ||||| || Sbjct 29339 TCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCAAAG 29280 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || || || |||| || | | |||||||| ||||| |||||| | Sbjct 29279 ATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTTGGTCTTGACATTG 29220 Query 46523 GCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | || | | || |||| |||||||| || || |||| || || || Sbjct 29219 TCGATGGTGTCAGATCCCT-CAACTTCCAGGGTGATGGTCTTTCCAGTCAAGGTCTTTAC 29161 Query 46582 AAAGATTTGCAT 46593 |||||||||||| Sbjct 29160 AAAGATTTGCAT 29149 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | || ||| | |||| ||| | ||| |||||||| || ||||||||||| Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || ||||| | || ||||| ||||| |||||||| || | | || || |||| || Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC-GCTCGATTCCAC 46545 | | |||||||| ||||| |||| | | | | ||||| | || || || Sbjct 29483 ATTCCTTCCTTGTCTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATC-CCTCGAC 29425 Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| || || || ||||| || || || || ||||| |||||||| Sbjct 29424 TTCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 >seq420 Length=40905 Score = 100 bits (110), Expect = 3e-16 Identities = 140/194 (72%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || |||||||||||||||||||| | || ||||| ||||||||||| || Sbjct 13810 CTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAA 13869 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || || || |||| || | | |||||||| |||||| |||| | | Sbjct 13870 GATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATT 13929 Query 46522 CGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | ||||| | || ||| || |||| |||||||| || || |||| || || | Sbjct 13930 GTCGATGGTGTCTGATC-CTTCGACCTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGA 13988 Query 46581 CAAAGATTTGCATT 46594 | || || |||||| Sbjct 13989 CGAAAATCTGCATT 14002 Score = 89.7 bits (98), Expect = 6e-13 Identities = 142/200 (71%), Gaps = 8/200 (4%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 ||||||||| || ||||||||||| || || || |||| || || ||||| || || || Sbjct 14038 CTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAA 14097 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | | || || |||| || | | |||||||| |||||| |||||| ||| Sbjct 14098 GATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGT 14156 Query 46522 CG-CCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTT 46577 | | | ||||| || | || || || | |||||||| ||||| |||| || | Sbjct 14157 TGTCGATGGTGTCTGAGCCC---TCGACCTCAAGTGTGATGGTCTTGCCAGTCAATGTCT 14213 Query 46578 TAACAAAGATTTGCATTTTG 46597 | ||||||||||||||| || Sbjct 14214 TGACAAAGATTTGCATTATG 14233 >seq456 Length=67341 Score = 96.9 bits (106), Expect = 4e-15 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || || || || |||| || | ||||| ||||| || Sbjct 21391 CTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCCAATTGCTTTCCGGCAAA 21450 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| || ||||| |||| || | | ||||||||| |||||| ||||| | Sbjct 21451 GATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATT 21510 Query 46522 CGCCACCGTGTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | ||||| | || || || || | |||||||| || || || | || |||| Sbjct 21511 CTCAATGGTGTCAGATC-CCTCAACCTCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTAA 21569 Query 46581 CAAAGATTTGCATTTTG 46597 ||||||| ||||| ||| Sbjct 21570 CAAAGATCTGCATGTTG 21586 >seq355 Length=81473 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/184 (73%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 46412 ATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGC 46471 || ||||||||||| ||||| || | || ||||| ||||| ||||| || || | || Sbjct 81473 ATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATAAGACGT 81414 Query 46472 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGT 46530 ||||| |||| || | | |||||||| |||||| |||||| ||| | | | || Sbjct 81413 TGCTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGA-CGTTGTCGATAGT 81355 Query 46531 GTC-GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTT 46589 ||| | || ||| || || | |||||||| ||||| || | || || |||||||||| Sbjct 81354 GTCAGATC-CTTCGACCTCTAGTGTGATGGTCTTGCCAGTTAATGTCTTTACAAAGATTT 81296 Query 46590 GCAT 46593 |||| Sbjct 81295 GCAT 81292 >seq79 Length=127859 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||||||||| ||||| || || || ||||| | || || | |||||||||||||| Sbjct 118813 CTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCCAATTGCTTGCCGGCGAA 118754 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGA 46517 ||||| || ||||| |||| || | | ||||||||| |||||| ||||| Sbjct 118753 GATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTGA 118698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565139447952600