Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014458.1 Length=59598 Score E Sequences producing significant alignments: (Bits) Value seq582 120 1e-22 seq5362 113 2e-20 seq3838 82.4 3e-11 >seq582 Length=79996 Score = 120 bits (132), Expect = 1e-22 Identities = 150/203 (74%), Gaps = 2/203 (1%) Strand=Plus/Plus Query 53307 TCGACGACCAGACGCTTGCGCAGGC-GCAGCAGATCGCCGATCTGCCTTTCGTTTATCCG 53365 |||||| ||| |||| |||| || ||| || |||||| ||||| ||||||||||| Sbjct 74505 TCGACGCGCAGGCGCT-GCGCCAGCTGCACCATATCGCCAGCCTGCCCATCGTTTATCCG 74563 Query 53366 CATGTGGCGCTGATGCCTGATGCGCATTTCGGTAAGGGCAGCAGTGTCGGCACGGTGATC 53425 || |||| | ||||| || | |||| ||| | ||| || ||||||| ||||| Sbjct 74564 CACGTGGTGGCCATGCCCGACGTGCATGCCGGCATCGGCGCCACCGTCGGCAGCGTGATT 74623 Query 53426 CCGACCGAGGGCGCTGTGATCCCGGCGGCCGTCGGCGTCGATATTGGCTGCGGCATGATC 53485 || || ||||| || |||||||| ||||| |||||||| || ||||||||||||| | Sbjct 74624 CCCACGCGCGGCGCCGTCATCCCGGCCGCCGTGGGCGTCGACATCGGCTGCGGCATGAAC 74683 Query 53486 GCAGCCCGCACCACGTACACGGC 53508 || | ||||| || | ||||| Sbjct 74684 GCCGTGCGCACGACCTTGACGGC 74706 >seq5362 Length=3136 Score = 113 bits (124), Expect = 2e-20 Identities = 310/477 (65%), Gaps = 5/477 (1%) Strand=Plus/Minus Query 53696 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 53755 |||||||| ||||||||| || || |||||||||||| || ||||| | |||| Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 53756 CGCGTGTGGTTGTTCCTGCACTCCGGTTCGCGTGGCGTCGGTAACAAGATCGCGCAGAAG 53815 |||| ||| ||||||||||||| || || || |||| |||||| |||||||| | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 53816 CACATTCAGGCCGCGCAGGGCTATTGCCTCGCCAATGGGC-TGCACGTGCCACACAAGGA 53874 ||||| || ||| ||| || || | || | | | || | || | ||| Sbjct 442 CACATCAAGATCGCCAAGGACTTGTG-CGAGCGGTGGTACATCAACCTTCCCGATCCGGA 384 Query 53875 TCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTTGAATTACGTTG 53934 ||| || ||||| |||||| || ||| |||||| ||| || || | || Sbjct 383 TCTTGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGATCTCAACTG 324 Query 53935 GGCGCAGCGGTTTGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGGCGTT 53994 ||| |||| || || | |||||||| || ||||||||||| ||| | ||| || Sbjct 323 GGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTGAAGGACTT 264 Query 53995 CCGCCATTGGGTCGGCGCCGACCAG-NNNNNNNNNNNNNNNNNNNNNACC--ATCAACGC 54051 | |||| | || | || | || | | |||||| Sbjct 263 CGCGCATTTCATGGGAGACGGCAAGCCCGCGATCATCGACGAAGTCGAGCGGATCAACTG 204 Query 54052 GCACCACAACTACACGCAGAAGGAGCGGCACGGCGACCGTGACGTGTGGTTGACCCGTAA 54111 |||||||||| ||| ||||||||| ||| | | | | |||||| ||| |||||| Sbjct 203 CCACCACAACTTCACCCAGAAGGAGTTCCACATGGGCAGGGGTGTGTGGCTGAGCCGTAA 144 Query 54112 GGGTGCGATCGACGCGAACGAGGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCAC 54168 |||||||||| | || |||||||| || || || || || || |||||||| || Sbjct 143 GGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCGGTTCGATGGGGAC 87 >seq3838 Length=2938 Score = 82.4 bits (90), Expect = 3e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 1000 GTAGCTCAATTGGCAGAGCAGCGGTCTCCAAAGCCGCCGGTTGCACGTTCGAGTCGTGCC 1059 ||||||||| |||||||||||||||||||||| |||| ||||||| |||| |||| || | Sbjct 1710 GTAGCTCAACTGGCAGAGCAGCGGTCTCCAAAACCGCAGGTTGCAGGTTCAAGTCCTGTC 1769 Query 1060 GCGCCCGC 1067 || || || Sbjct 1770 GCCCCTGC 1777 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 190560302763600