Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014459.1 Length=59798 Score E Sequences producing significant alignments: (Bits) Value seq5362 127 8e-25 seq582 86.0 2e-12 >seq5362 Length=3136 Score = 127 bits (140), Expect = 8e-25 Identities = 316/481 (66%), Gaps = 13/481 (3%) Strand=Plus/Minus Query 54408 CAGCTCGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGAC 54467 |||||||| ||||||||| || || |||||||||||| || ||||| | |||| Sbjct 562 CAGCTCGGAACGCTGGGCTCTGGTAACCACTTCATCGAGGTGACACTCGATGAAAGCGAC 503 Query 54468 CGGGTGTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCGCGCAGAAG 54527 | || ||| ||||||||||||| || || ||| |||| |||||| |||||||| | Sbjct 502 GGCGTCTGGCTGTTCCTGCACTCGGGAAGCCGCGGTATCGGAAACAAGCTCGCGCAGCAT 443 Query 54528 CACATTCAGGCCGCGCAGGGCTATTGCCTCGCCAACGG-GCTGC----ACGTGCCGCACA 54582 ||||| || ||| ||| | ||| || | ||| | | | || | || | Sbjct 442 CACATCAAGATCGCCAAGGAC--TTG---TGCGAGCGGTGGTACATCAACCTTCCCGATC 388 Query 54583 AGGATCTGGCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAACTGC 54642 |||||| || ||||| |||||| || ||| |||||| ||| || ||| || Sbjct 387 CGGATCTTGCCTACCTGGTCGAGAAGACACCCGAATTCGACTCGTACATCACCGATCTCA 328 Query 54643 GCTGGGCGCAGCGGTTCGCGTACTACAACCGCGCCGAAATGATGGACCGATTCGAGCAGG 54702 |||||| |||| ||||| | |||||||| || ||||||||||| ||| | ||| Sbjct 327 ACTGGGCTCAGCACTTCGCTTTGCTCAACCGCGAAGAGATGATGGACCGCGTCGTGAAGG 268 Query 54703 CGTTCAGGCATTGGGTCGGCGCCGACCAG-NNNNNNNNNNNNNNNNNNNNNACC--ATCA 54759 ||| ||||| | || | || | || | | |||| Sbjct 267 ACTTCGCGCATTTCATGGGAGACGGCAAGCCCGCGATCATCGACGAAGTCGAGCGGATCA 208 Query 54760 ACGCGCACCACAACTACACGCAAAAGGAGCGGCACGGCGACCGTGATGTGTGGCTGACCC 54819 || |||||||||| ||| || |||||| ||| | | | | ||||||||||| || Sbjct 207 ACTGCCACCACAACTTCACCCAGAAGGAGTTCCACATGGGCAGGGGTGTGTGGCTGAGCC 148 Query 54820 GTAAGGGGGCGATCGACGCGAACGCCGGTGTGCGGGGCCTGATTCCGGGCTCGATGGGCA 54879 ||||||| |||||| | || |||| || || || || || || || |||||||| | Sbjct 147 GTAAGGGTGCGATCAAGGCAAACGAGGGCACGCCCGGGCTCATCCCCGGTTCGATGGGGA 88 Query 54880 C 54880 | Sbjct 87 C 87 >seq582 Length=79996 Score = 86.0 bits (94), Expect = 2e-12 Identities = 189/277 (68%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 54413 CGGCACGCTGGGCGGCGGCAATCACTTCATCGAGCTGTGCCTCGACCACCTCGACCGGGT 54472 |||||| |||| ||||||||||||||||| || | ||||||||| | | || || Sbjct 74920 CGGCACCTTGGGGGGCGGCAATCACTTCATTGAAATCTGCCTCGACGAGGAGCAGCGCGT 74979 Query 54473 GTGGTTGTTCCTGCACTCCGGTTCTCGTGGTGTCGGTAACAAGATCGCGCAGAAGCACAT 54532 |||| | | ||||| || || || || || |||| ||| |||| | | ||| Sbjct 74980 GTGGGTCATGCTGCATTCGGGCTCGCGCGGCATCGGCAACGCCATCGGTCGTTACTTCAT 75039 Query 54533 TCAGGCCGCGCAG--GGCTATTGCCTCGCCAACGGGCTGCACGTGCCGCACAAGGATCTG 54590 ||||||||| || | ||| |||| || |||||| ||||| || ||| ||| Sbjct 75040 CGCCGCCGCGCAGAAGGACA-TGCGGCGCC-ACCAGCTGCAGCTGCCGGACGCGGACCTG 75097 Query 54591 GCGTACCTCGTCGAGGGCACGGTCGAGTTCGACCGCTACCTCGTCGAACTGCGCTGGGCG 54650 ||||| || ||| ||| | | | ||||||| |||| | | | || ||||||| Sbjct 75098 GCGTATCTGAGCGAAGGCTCCGCGGTGTTCGACGACTACGTGGAGGCGGTGGACTGGGCG 75157 Query 54651 CAGCGGTTCGCG-TACTACAACCGCGCCGAAATGATG 54686 ||| | |||| | || |||||||| ||| |||||| Sbjct 75158 CAGGATTACGCGCTGCT-CAACCGCGGCGAGATGATG 75193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 191200196325600