Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014461.1 Length=73453 Score E Sequences producing significant alignments: (Bits) Value seq6710 89.7 2e-13 seq1098 89.7 2e-13 seq813 84.2 1e-11 >seq6710 Length=1542 Score = 89.7 bits (98), Expect = 2e-13 Identities = 70/83 (84%), Gaps = 2/83 (2%) Strand=Plus/Minus Query 63237 AGCAGGACTCGAACCTGCGACCTGTCGCTTAAAAGGCGATAGCTCTACCAACTGAGCTAT 63296 || ||||||||||||| ||||||| | ||||||| | ||||||||||||||||||||| Sbjct 1542 AGTAGGACTCGAACCTACGACCTGCGGATTAAAAGTCCGTAGCTCTACCAACTGAGCTAT 1483 Query 63297 AGGGGCCTGCGGGCCTGAGTCTA 63319 |||||| |||| | ||||||| Sbjct 1482 AGGGGC--GCGGCGCAGAGTCTA 1462 >seq1098 Length=31487 Score = 89.7 bits (98), Expect = 2e-13 Identities = 67/79 (85%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 61289 AGCGGCCTTTGCCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGC 61348 ||| ||| ||| |||||||||||| ||||||||| || |||| |||||| || |||||| Sbjct 15429 AGCCGCCCTTGGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGC 15488 Query 61349 AGGTTCAAATCCTGCACGG 61367 |||||| ||||| |||||| Sbjct 15489 AGGTTCGAATCCCGCACGG 15507 Score = 86.0 bits (94), Expect = 3e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 61296 TTTGCCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCA 61355 |||| |||||||||||| ||||||||| || |||| |||||| || |||||||||||| Sbjct 8653 TTTGGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCG 8712 Query 61356 AATCCTGCACGG 61367 ||||| |||||| Sbjct 8713 AATCCCGCACGG 8724 Score = 86.0 bits (94), Expect = 3e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 61296 TTTGCCTCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCA 61355 |||| |||||||||||| ||||||||| || |||| |||||| || |||||||||||| Sbjct 15591 TTTGGGTCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCG 15650 Query 61356 AATCCTGCACGG 61367 ||||| |||||| Sbjct 15651 AATCCCGCACGG 15662 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||| ||||||||| || |||| |||||| || |||||||||||| ||||| Sbjct 8494 TCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCGAATCCC 8553 Query 61362 GCACGG 61367 |||||| Sbjct 8554 GCACGG 8559 >seq813 Length=65357 Score = 84.2 bits (92), Expect = 1e-11 Identities = 58/66 (88%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 61302 TCGTTAGCTCAGTTGGTAGAGCTGCCGACTCTTAATCGGTAGGTCGCAGGTTCAAATCCT 61361 |||||||||||| ||||||||| || |||| |||||| || |||||||||||| ||||| Sbjct 20909 TCGTTAGCTCAGCTGGTAGAGCAGCGGACTTTTAATCCGTTGGTCGCAGGTTCGAATCCC 20850 Query 61362 GCACGG 61367 |||||| Sbjct 20849 GCACGG 20844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 234884701640270