Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq404 250 3e-61 seq371 116 5e-21 seq689 98.7 1e-15 seq531 93.3 5e-14 seq47 93.3 5e-14 seq104 89.7 6e-13 >seq404 Length=78127 Score = 250 bits (276), Expect = 3e-61 Identities = 901/1388 (65%), Gaps = 60/1388 (4%) Strand=Plus/Minus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||| | | |||||||| || | || ||||| ||| Sbjct 49818 CCCCAGCACATGCTCATGCGTGTCTCTCTTGGTATCCACGGCGCCGACATTGACGCTGCC 49759 Query 111672 TTGGAGACATACGACAAGATGTCCC-GTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| || || || | |||| | | || || | |||||| || ||||||||||| Sbjct 49758 ATCGAGACCTATGAGCAGCTTTCCCAGCGCTACTTT-ACCCACGCCACCCCAACCCTCTT 49700 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 ||| | || || || |||||||| || |||||| | | ||||| || Sbjct 49699 TAACTCGGGCACCTGCTCGCCACAAATGTCGTCGTGCTTCCTTGTCCAGATGAAGGATGA 49640 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| |||| || |||| || |||| |||| |||| ||||| |||| ||| || Sbjct 49639 CTCGATCGATGGTATCTACGATACCCTCAAGCAATGCGCCCTCATCTCCAAGTCGGCCGG 49580 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 || || || | |||| | || | || | || ||| | || || || Sbjct 49579 AGGCATTGGTCTCGCTGTCCACAAGATCCGCGCTGCCCGTTCATATATCCGCGGCACCAA 49520 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| ||| | ||| | |||| ||||||||||| || |||| ||| || ||||| || Sbjct 49519 CGGTACATCCAACGGTCTCGTTCCCATGCTTCGCGTGTTCAACGACACTGCTCGCTACGT 49460 Query 111971 AAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCATGGCACGC 112027 |||||| || | ||||||||| | | || |||| || |||||||||||||| Sbjct 49459 CGACCAAGGAGGTGGCAAGCGCAAGGGAGCCTTTGCCATCTACCTCGAGCCATGGCACGC 49400 Query 112028 GGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCGGTGCCG 112087 ||| |||||||||||||||| | || ||||| || | || ||| ||| ||| Sbjct 49399 CGATGTCATGGAGTTCCTTGACCTTCGCAAGAACCACGGAAAGGAAGAGATGCGTGCCCG 49340 Query 112088 CGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGAGTGG 112147 || ||||| | ||| |||||| | | |||||||| ||| || | || |||| | | Sbjct 49339 TGACCTCTTTTACGCCCTCTGGGTATCCGATCTCTTTATGGAGCGTGTCGAGGCCAACGC 49280 Query 112148 CAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGTGAGGA 112207 | | ||| | ||||||||||| || |||| || |||||| | ||| | ||| || || Sbjct 49279 CGAGTGGACACTCTTTTGTCCCAACGAGGCCCCAGGTCTCGCTGATTGCTGGGGAGACGA 49220 Query 112208 GTTTGAAGCCCTCTACACAAAGTACGAGG--AAGAAAG---TCGGGCGACTGCGACGGTG 112262 ||| || |||||||| ||||||| | || |||| || ||| | Sbjct 49219 GTTCCGCGCTCTCTACACCCGCTACGAGGCCACCCCAGGTCTCGGTCG--CAAGACCAT- 49163 Query 112263 CCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCA 112319 | || ||| ||| | ||| | ||| || |||| || | |||||||| || ||| Sbjct 49162 CAAG--GCCCAAGATCTCTGGTTCTCCATTATCGAGTCGCAGATTGAGACTGGCACCCCA 49105 Query 112320 TATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATC 112379 ||||| || ||||| |||||||| || ||| || ||| ||||| | || ||| Sbjct 49104 TATATCCTCTACAAGGACGCCTGCAATGCCAAGTCAAACCAACAGAATCTCGGCACCATC 49045 Query 112380 AAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTG 112439 || | ||||||||||| ||||| || | ||| || || || ||| ||| Sbjct 49044 CAGTGCTCCAACCTCTGCACAGAGATTGTCCAATACACCTCTCCCGACGAAGTGGCCGTG 48985 Query 112440 TGTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGAGACAAAGA-------- 112491 || |||||||| || || || || ||||||| ||| | || || ||| || Sbjct 48984 TGCAACCTCGCCTCGATTGCCCTACCCAAGTTTGTTGTGCC--AGCCAAGGATGGCGTTC 48927 Query 112492 -----CA-TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAA 112545 || ||| | | || | ||| ||| | || | |||| ||||| | Sbjct 48926 CCGCCCACTTTAACCACCAACATCTCTTTGAAATGACCTGTATCATCACTCGCAACCTCA 48867 Query 112546 ACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGAC 112605 || | | ||||| | || | ||||| ||| | || |||| || || ||| | | Sbjct 48866 ACCGCATCATTGACCGCAACTACTACCCTGTTCAAGAGGCCCGTACCTCCAACATGCGTC 48807 Query 112606 ACCGTCCAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACG 112665 | |||||||| ||| ||||| ||||||||||||| || | ||||| |||||| | Sbjct 48806 ATCGTCCAATCGGTATCGGTATCCAAGGTCTCGCCGACG-------TCTTTATCGCCATG 48754 Query 112666 CATTTG--ATTC----CGACGAAGCGAAGGAAATC-AATGCGCGTATATT--TGAGACAA 112716 | | || |||| |||| || | || | | |||| | ||| ||||| | Sbjct 48753 CGTATGCCATTCGATTCGAC-TGCCGCTGCCAACCTTAACCGCG-AGATTGCCGAGACCA 48696 Query 112717 TGTATCACGCCGCTCTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAA 112776 | ||| ||| || || || | ||| | || | || ||||| ||||||| Sbjct 48695 TCTATTTCGCTGCCCTCACTGCCTCTAACGAGATTGCCGTCAAGGAGGGTCCCTATGAAA 48636 Query 112777 CCTTTGAGGGTTCTCCAGCTTCA-CAAGGG-GTGCTTCAATTTGATATGTGGGAAGGTGA 112834 |||| || ||| || || |||||| | |||||| |||||||||| || | Sbjct 48635 CCTTCCCAGGAAGTCCCGC--CAGCAAGGGAATCCTTCAACCAGATATGTGGG-GTGTCA 48579 Query 112835 GACCAAGCTTCAC--TACGACTGGGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTT 112892 |||| || ||| | |||||| | ||||||| || ||| | | || || Sbjct 48578 CACCAGGC-CCACGTTGGGACTGGACTGGACTCAAGGCCCGTATCGTTGCCACTGGAATT 48520 Query 112893 CGTAACAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAAT 112952 |||||| |||| | | || ||||||||||| ||||| || | |||||| | |||||| Sbjct 48519 CGTAACTCTCTTCTCGTTGCTCCAATGCCAACTGCCTCTACTTCTCAAATCCTTGGTAAT 48460 Query 112953 AATGAATG 112960 |||||||| Sbjct 48459 AATGAATG 48452 >seq371 Length=37358 Score = 116 bits (128), Expect = 5e-21 Identities = 279/417 (67%), Gaps = 15/417 (4%) Strand=Plus/Minus Query 15878 GATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 15937 ||||| ||||| || | ||| || || ||||| || | || || | ||| ||||| Sbjct 20542 GATCTGGCGATCGAATCTACCGGGCCGCAGGAGAGCATTGTCGAGTACATCGGGACGATT 20483 Query 15938 CGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 || |||| | ||||||| |||| | | || | || |||||||||||| ||| || Sbjct 20482 GGTACCGGCAAACACAACAACACCTTCGTTGCTACCGAATCCATCCATCTCTACCAAGAG 20423 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTT 16057 || || | || | || ||||| ||||| ||| | || ||| | | ||| Sbjct 20422 TTGATTGAGTGTATTCTCGCGTTCGTCATTG--TGGAAG----CCGCCACGGGAT--CTT 20371 Query 16058 T-----CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCG 16112 || |||||||||||||| || ||||| | ||| |||| ||| |||||||| Sbjct 20370 GAACGACCGACGGCATCAATCTCGTCGATGAATATGATTGATGGAGCATTCTCGCGAGCC 20311 Query 16113 ACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTT 16172 ||| ||||||||| || |||||| | || ||||| ||||||||||| | || | Sbjct 20310 TCTTTAAAGAGATCACGGACACGCGATGGACCAACACCGACAAACATCTCGATGAAATCC 20251 Query 16173 GCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAG 16231 | | | | || | || |||||| || ||| ||||| ||| |||| |||||| | Sbjct 20250 GATCCAG-AGATGGTGAAGAAGGGCACGCCAGACTCACCAGCAGTGGCCTTGGCGAGCAA 20192 Query 16232 AGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC 16288 ||||| || || ||||| || | || | |||||| || |||||||| || Sbjct 20191 GGTCTTGCCAGTGCCTGGAGGGCCAACAAGAATGGCACCCTTGGGGATCTTGGCACC 20135 >seq689 Length=46727 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/233 (70%), Gaps = 3/233 (1%) Strand=Plus/Plus Query 102099 GCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGAT 102158 ||||| | || |||||||| | | ||||| || || ||||| ||| ||| | Sbjct 18083 GCCATAGAGACTATTCCATGTGTCAAGAAGAAGGCTGACTGGGCATTGAGATGGATCT-- 18140 Query 102159 ACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTC 102218 |||| || || ||||| ||||| | | || ||||| || ||||||||||| Sbjct 18141 -CAAATTCCAAGTCGTTTGCCGAGCGTTTGGTGGCGTTTGCAGCCGTCGAGGGTATCTTT 18199 Query 102219 TTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTC 102278 ||||||||| ||||| | || | ||||||||||||||| || | ||||||||| | Sbjct 18200 TTCTCTGGTAGTTTCTGTTCAATCTTTTGGCTCAAGAAGCGTGGATTGATGCCAGGTTTG 18259 Query 102279 TGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 ||| ||||||||| | ||| |||||||| || | ||| || ||||| Sbjct 18260 ACCTTTTCCAACGAGTTGATCAGCCGTGACGAAGGTTTGCACTGCGACTTTGC 18312 >seq531 Length=89189 Score = 93.3 bits (102), Expect = 5e-14 Identities = 180/264 (68%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 102051 ATAGACAAGTATATTAAGGATGGTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACA 102110 ||||| | |||||||| ||| ||| |||| || | || | || || | ||| Sbjct 88149 ATAGATACATATATTAAAGATACATTTGAAAAGACCAAGTTATTCAATGCTATAGAGACA 88090 Query 102111 GTTCCATGTATTCAAAAGAAAGCGGATTGGGCTATGAAGTGGTTTGATACA-AAGTCGCG 102169 |||||||| | ||||||| || ||||||||| | | ||| |||| | || || Sbjct 88089 ATTCCATGTGTCAAAAAGAAGGCTGATTGGGCTCT----TCGTTGGATAAACAACTCTGC 88034 Query 102170 TTCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTC 102229 || ||||| ||| |||| | |||||||| || || |||||||| |||||||| Sbjct 88033 ATCGTTTGCAGAGAGACTGGTGGCATTTGCAGCAGTCGAAGGTATCTTTTTCTCTGGAAG 87974 Query 102230 CTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAA 102289 ||||| | || | ||||||||||| || || | ||||| ||||| | ||| || Sbjct 87973 TTTCTGTTCGATATTCTGGCTCAAGAAACGTGGCTTGATGCCTGGTCTGGCCCACTCGAA 87914 Query 102290 CGAGCTTATCTCTCGTGACGAGGG 102313 |||| |||| ||| || || || Sbjct 87913 CGAGTATATCAGTCGCGATGAAGG 87890 >seq47 Length=36934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 16068 TCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCC 16127 |||||||| |||||||| | ||| |||||| || | |||||| |||||||| || Sbjct 33505 TCAATCTCGTCAATGAATATGATACATGGTGCGTTCTTGCGAGCAGTCTCAAAGAGCTCG 33446 Query 16128 CGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAA 16168 || |||||||||||||| ||||| ||||||||||| |||| Sbjct 33445 CGGACACGCTTGGCGCCGACACCGACAAACATCTCTTCAAA 33405 >seq104 Length=86770 Score = 89.7 bits (98), Expect = 6e-13 Identities = 207/304 (68%), Gaps = 15/304 (5%) Strand=Plus/Minus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| ||||| || ||||| || | | || || | || |||||||| || || Sbjct 31690 ATCTGTCGATCGAAACGACCGGGTCTCAATAGAGCTTGGTCGAGGATATCTGGACGGTTT 31631 Query 15939 GTTGCGGCGATGACAACAA--TACCTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAA 15996 || ||||| | || |||| | | || | | | |||||||||||||||| | | Sbjct 31630 GTGGCGGCAAGTACTACAACGTTCTTGAGTGG--AGTAAAACCATCCATCTCTACGAGCA 31573 Query 15997 GCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG----GCATACCACCAGCACTGCGT 16052 |||||| | ||| | || || |||||||||| | | || ||||| | | | Sbjct 31572 ACTGGTTGAGAGTGTTCTCACGCTCATCATTCGATCCACTGAAT-CCACCTTTTCCTC-T 31515 Query 16053 TGCT-TTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGC 16111 |||| |||| | ||| |||||||| || || || || ||||||||| | | | | || Sbjct 31514 TGCTCTTCCAATGGCGTCAATCTCGTCGATAAACACAATGCATGGTGCACTCTTTCTTGC 31455 Query 16112 GACTTCAAAGAGATCCCGTACAC--GCTTGGCGCCCACACCAACAAACATCTCCACAAAG 16169 |||||||||||| ||||| | ||| | | | || |||||||||||||| |||||| Sbjct 31454 CTGTTCAAAGAGATCACGTACTCTAGCTGGTC--CAACTCCAACAAACATCTCTACAAAG 31397 Query 16170 TTTG 16173 | || Sbjct 31396 TCTG 31393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620633731283600