Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq98 129 7e-25 seq371 113 5e-20 seq377 102 1e-16 seq78 95.1 1e-14 seq208 89.7 6e-13 >seq98 Length=772300 Score = 129 bits (142), Expect = 7e-25 Identities = 1021/1643 (62%), Gaps = 36/1643 (2%) Strand=Plus/Plus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || ||||||||||| || ||||| | ||| ||||| || || | |||||| |||| Sbjct 407710 CGCAGATAATACATTCCGGTTTTCAAACCTTTTTTCCAGGCATAGAAATGCATAGAAGTC 407769 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 |||||||| | || | ||||||| ||||| || || ||||| |||| | Sbjct 407770 AGTTTGGATGTATTTGGTGCATTGATAAACAGGTTCAGGGATTGCGACTGGCAGATGTAG 407829 Query 109528 CGACCACGATCAGCCGCCATGTC---GATGATACACTTTTGGCTAATTTCCCAGACAGTC 109584 ||| || || || ||||| || |||| | | | ||| |||||||||| || || Sbjct 407830 GCACCGCGGTCGGCTGCCATATCAATGATGCTGCGCATTT---TAATTTCCCAAACTGTT 407886 Query 109585 TTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCC 109644 ||||||| | || |||| ||| ||||| || | |||| |||||||| || ||| Sbjct 407887 TTGTACAGTTCTTTAATATAATCCGGAATCTCGGCAATGTCCTGAATAGAACCGTTCGCC 407946 Query 109645 TTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATC-GTCAAC 109703 | || || |||||| | | ||| | || | || || | ||| Sbjct 407947 AGAATAATTCTGTCTTTCATCGCAGGTGTCCATAAGCCTAGGGCCACCAGGTCTTTTAAC 408006 Query 109704 AAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGT 109763 ||| |||||||| || || | ||| || || | | | || | || ||||| | Sbjct 408007 AAG-TGCTTGTTCACGACAATAAACTCTCCGCTCAATACCCTTCTGGTATAAATGTTTGA 408065 Query 109764 CGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCAT 109823 ||||| || || ||||||||||||||||| ||||| || | ||||||||| || ||||| Sbjct 408066 AGTGTAAGGCTCAAAACACTCATTGTTGCCCAGGATCTGAGAAGTGGAAGCCGTTGGCAT 408125 Query 109824 GGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTT----TACCCGCTCACGCATTG 109879 || |||| || || ||| | | || | ||| || ||| ||||||| || Sbjct 408126 TGGCGCCACCAGCAGGGAGTT--GTACACGC--CGTTTTTGACTACTTTTTCACGCAATG 408181 Query 109880 CGTCCCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTA 109939 ||||| || | || || | | || | ||| ||| | || || | | Sbjct 408182 TTTCCCAGTCCCAGCGGTTGCT--GTCTGGT-TGTACATTCCATAGGTCAAACTGGAATT 408238 Query 109940 CACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACT 109999 ||| || | |||||||| |||||| ||| ||| | || | | |||| | Sbjct 408239 TACCTTCTGACAATGGAGAACCTTTGAAAGTCTGGTAAGGACCATGTTTAACAGCCAGGT 408298 Query 110000 CGGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGC 110059 | ||| ||| | || || ||| || || |||||||| | ||| | | Sbjct 408299 CATGTGAGGCCGTCATGGCAGCGAAATAAATCGTTTCAAAAATTTCTTTATTTAAAATTT 408358 Query 110060 GAGACTCTTCACAGTCGAAGGGAAGACCACAAAGAATAAACACATCCGCTAGACCCTGAA 110119 | | |||||| || || || | || || ||||| |||| || | ||||| | Sbjct 408359 TTGCCCCTTCACTTTCAAATGGTAAACGCATCAGGATAAAAGCATCTGCCAATCCCTGTA 408418 Query 110120 CACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAA 110179 |||| | ||||| || | || |||||| || | ||| ||||| || ||| Sbjct 408419 CACCTAAACCAACTGGTCTGTGGCGCATGTTGGAATTTTTAGCTTCCTCTACCGGATAAT 408478 Query 110180 AGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCATGGAGTT 110239 | || | || || | ||| || ||| || | | || | |||| | || Sbjct 408479 AATTATGATCAATAATTTTATTCAGGTTCAGGGTAGCCTGATAGGTTACATCATATAATT 408538 Query 110240 TGTCGTAATCGAACGTTTTCGTCTCC-TTATTGACATATTTGGGGAGAGCAATAGACGCA 110298 | | | ||| ||| ||||| || ||||| || | || | ||| | || || Sbjct 408539 TCTGATGATCAAAC-------TCTCCGTTGATGACAAATCTTGGCAAAGCCAACGAGGCC 408591 Query 110299 AGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCGTACACAAGTTG 110358 || || || |||| | |||||||||| || || || | |||||| ||||| | |||| Sbjct 408592 AGGTTACATACAGCAACCTCGTCTTTGGAAGTATACTCTATAATTTCTGTACAAAGGTTG 408651 Query 110359 GAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATGCATCCTTATAG 110418 ||||| || ||| || || || | ||| || |||||| ||| |||||| ||||| Sbjct 408652 GAACTTTTGATGGTTCCTAAATTTTGCTGGTTGGATTTGCTGTTTGCTGCATCTTTATAC 408711 Query 110419 AGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCCATACATCGGCG 110478 | || || ||||| || ||||| ||||||| | |||||||| ||| | || Sbjct 408712 AACAGATAAGGGGTTCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCAAAGCTCTTGT 408771 Query 110479 GCGGGGACAGTTGCGTTA---GCGAGACCTTCCTCCTCGTACTTGGTGTACAAGTCCTCA 110535 || | ||| ||| || | ||||| | ||||| || || | || Sbjct 408772 GCTTTAATGGTT---TTACGGGCACGTCCTTCTTTTTCGTAACGCTCATATAAAGCATCG 408828 Query 110536 AATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGGGACCAA 110595 ||||| || | ||| | || ||| || | | |||||||| | ||| Sbjct 408829 AATTCTGCACCAAAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAATAAACTCCAG 408888 Query 110596 TTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCGAGAAAAGG 110655 | ||| || || ||||| |||||||||||||| | ||| | || |||| | Sbjct 408889 TCTCCGTTTTCTTCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGCATAGAATAAA 408948 Query 110656 TCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTCCATGATA 110715 || | | |||| ||||| | ||| ||||| || || |||| ||| || | | Sbjct 408949 TCTCTGGCACGAAGTTCTTCTTTACCATGGTTTTTACGCAGGTCCAGAAAACTCAGCACA 409008 Query 110716 TCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACCCGCCTGG 110772 || | |||||||| || || || | || | | || ||||| || || ||||| Sbjct 409009 TCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTTTACCTCCACCCTGG 409068 Query 110773 TTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATCGGATTGA 110832 | ||||| || || || | || || || | | |||||| | ||| |||| | Sbjct 409069 TCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGGTACAATCCCATTGCTGGTC 409128 Query 110833 CCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCATACCAATA 110892 || ||||| || | ||| || ||||||| |||| ||||| | ||||||| Sbjct 409129 CCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGTTATGGATGCTTAAACCAATA 409188 Query 110893 CCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACCATCAATC 110952 ||||| || | | ||||| || | | | | ||| | ||||| || ||||| Sbjct 409189 CCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGTAAATTCCTTCAATA 409248 Query 110953 GAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGTTCCCGCA 111012 || ||| ||| | || |||||| |||||||| ||||| ||| || | ||| Sbjct 409249 CTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTTTAGGGGTAGCTGCA 409308 Query 111013 TTGAAGAGTGTAGGTGTCGCATG 111035 || || | || || || ||||| Sbjct 409309 TTAAATAAAGTTGGGGTTGCATG 409331 >seq371 Length=37358 Score = 113 bits (124), Expect = 5e-20 Identities = 318/482 (66%), Gaps = 21/482 (4%) Strand=Plus/Minus Query 11497 ATCTTACGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTT 11556 |||| |||||||| | ||| || || || ||||||| || || | |||| ||| || Sbjct 20541 ATCTGGCGATCGAATCTACCGGGCCGCAGGAGAGCATTGTCGAGTACATCGGGACGATTG 20482 Query 11557 GTAGCGGCAATGACTACAATGCCAGTCTCATTGT---CGAAACCGTCCATTTCTGTGAGA 11613 ||| |||||| || |||| || || ||| |||| || ||||| ||| | Sbjct 20481 GTACCGGCAAACACAACAACACCT---TCGTTGCTACCGAATCCATCCATCTCTACCAAG 20425 Query 11614 AGCTGGTTGATCGTCTGTTCACGCTCATCGTTG--GAGGGCATACCACCTGCC---GAAC 11668 || || |||| || | || || || || ||| || | | |||| | |||| Sbjct 20424 AGTTGATTGAGTGTATTCTCGCGTTCGTCATTGTGGAAGCCG--CCACGGGATCTTGAAC 20367 Query 11669 GCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTG 11728 | |||||| || |||||||| |||||||||| ||| | || || | || | Sbjct 20366 G------ACCGACGGCATCAATCTCGTCGATGAATATGATTGATGGAGCATTCTCGCGAG 20313 Query 11729 CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGT 11788 ||| || || || ||||| |||||| | |||||||| || |||||||| | ||| | Sbjct 20312 CCTCTTTAAAGAGATCACGGACACGCGATGGACCAACACCGACAAACATCTCGATGAAAT 20253 Query 11789 TTGCGGCAGA-ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGG 11847 | |||| | |||| |||||| || |||||||||||| |||| ||||| Sbjct 20252 CCGATCCAGAGATGGTGAA-GAAGGGCACGCCAGACTCACCAGCAGTGGCCTTGGCGAGC 20194 Query 11848 AGAGTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 | ||||| || || || || | ||| | |||| ||| || ||||||||||||||| Sbjct 20193 AAGGTCTTGCCAGTGCCTGGAGGGCCAACAAGAATGGCACCCTTGGGGATCTTGGCACCG 20134 Query 11908 CTTCCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTG 11967 | ||| | || ||||||||| ||||| |||| || ||||||||| Sbjct 20133 AGACGCTTGTACTTGGCGGGTGACTTGAGGAACGACACAAACTCCATAATCTCCTCCTTG 20074 Query 11968 GC 11969 || Sbjct 20073 GC 20072 >seq377 Length=20736 Score = 102 bits (112), Expect = 1e-16 Identities = 270/402 (67%), Gaps = 14/402 (3%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || |||||||| || || || || || || | || || | ||| | ||||| || ||| Sbjct 15126 CGGTCGAAACGGCCCGGACGCAGCAGCGCCTTGTCGAGCACGTCGGCGCGGTTGGTCGCG 15067 Query 11563 GCAATGACTACAATGCC--AGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGT 11620 || | ||| | | ||| ||| || | || ||||||||||| || || | ||||| Sbjct 15066 GCCACGACGATGACGCCGGAGT-TCGCT-TCAAAACCGTCCATCTCGACCAGCAACTGGT 15009 Query 11621 TGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCG--AACGC--TTCTTA 11676 | | |||||||| ||||| || ||| | | ||| ||||| | ||| | Sbjct 15008 TCAGGGTCTGTTCGCGCTCGTCATTGCCG--CCGCCCA--TGCCGGCACCGCGGTGGCGG 14953 Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGT-GCCTGTTC 11735 ||||||||||| |||||||||||||| | ||| ||||| | || | || | ||| Sbjct 14952 CCGACAGCGTCGATCTCATCGATGAAAATGATGCACGG-CGAATGCTTTTTCGCGTTTTC 14894 Query 11736 GAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGC 11795 ||| | || || ||||| | || || || || |||||||| || ||||||| | | Sbjct 14893 GAACATGTCGCGGACACGGCTGGCGCCCACGCCGACGAACATTTCCACGAAGTCGGAACC 14834 Query 11796 AGAACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTT 11855 ||| | | ||| || || || | || || |||||||| || || || || || || Sbjct 14833 GGAAATCGAGAAGAACGGCACCTTGGCTTCGCCGGCGATGGCGCGCGCCAGCAGGGTTTT 14774 Query 11856 ACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGAT 11897 |||||| || || | ||| | | || |||| ||||| || Sbjct 14773 ACCCGTGCCCGGAGGACCGACCATCAGCACGCCGCGGGGAAT 14732 >seq78 Length=66240 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 11742 TTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAGAACA 11801 ||||||||| | ||| || |||||||| ||| | ||||| | || | | ||| Sbjct 48560 TTCACGTACTCTCTTGGCACCAACACCAACGTATTTCTCATCAAAAGAGGAGCCAGTGGT 48619 Query 11802 CTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACCCGT 11861 | | ||| ||||||| || ||||||||| ||||| ||||||||||||||||| || || Sbjct 48620 GTAGAGGAATGGAACATCAGCCTCACCAGCAATGGCACGAGCGAGGAGAGTCTTTCCGGT 48679 Query 11862 ACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAGTAGCG 11921 ||| || |||| | | ||| ||| ||| | |||||||||| | | || || Sbjct 48680 ACCTGGCTCACCTGATAAGAGGATGCCCTTGGGTAGCTTGGCACCAATGGCGTCATAACG 48739 Query 11922 CTCAGGCTTCTTGAGGAAGTCCACAATCTC 11951 || || | ||||| | || |||||||| Sbjct 48740 TTCGGGATGTTTGAGATAATCGACAATCTC 48769 >seq208 Length=140336 Score = 89.7 bits (98), Expect = 6e-13 Identities = 171/244 (70%), Gaps = 10/244 (4%) Strand=Plus/Minus Query 11550 ACGGTTTGTAGCGGCAATGACTACAATGCCAGTC--TCATTGTCGAAACCGTCCATTTCT 11607 |||||| || || || || || | ||||| ||| ||||| || || |||||||| || Sbjct 87574 ACGGTTGGTTGCAGCGATCACGATGATGCC-GTCGTTCATT-TCAAAGCCGTCCATCTCA 87517 Query 11608 GTGAGAAGCTGGTTGATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCA--CCTGCCG 11665 || | |||||| | |||||| ||||||||||| | || || ||| || || Sbjct 87516 ACCAGCAACTGGTTAAGCGTCTGCTCACGCTCATCAT--GACCGCCGCCCATGCCGGCGC 87459 Query 11666 AACGCTTCTTACCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCAC 11725 ||| | ||| || ||||| || ||||||||||| | ||| ||||| || | | Sbjct 87458 CACGATGGCGACCAACGGCGTCGATTTCATCGATGAAGATGATGCACGGAGCGT-GCTTC 87400 Query 11726 GTG-CCTGTTCGAAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACG 11784 || |||||||||| | || || ||||| | || || ||||| || ||||| || ||| Sbjct 87399 TTGGCCTGTTCGAACATATCGCGAACACGGCTGGCACCTACACCGACAAACATTTCGACG 87340 Query 11785 AAGT 11788 |||| Sbjct 87339 AAGT 87336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588872892389000