Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq404 199 5e-46 seq689 91.5 2e-13 seq47 84.2 3e-11 seq104 82.4 9e-11 >seq404 Length=78127 Score = 199 bits (220), Expect = 5e-46 Identities = 592/902 (66%), Gaps = 26/902 (3%) Strand=Plus/Plus Query 106448 ACATACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTG 106507 ||| |||| || ||||| || || || | ||||| || ||| || || | ||| Sbjct 48950 ACAAACTTGGGTAGGGCAATCGAGGCGAGGTTGCACACGGCCACTTCGTCGGGAGAGGTG 49009 Query 106508 TACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTA 106567 || | | ||| ||||| || | |||||| | || || || || | ||||| |||||| Sbjct 49010 TATTGGACAATCTCTGTGCAGAGGTTGGAGCACTGGATGGTGCCGAGATTCTGTTGGTTT 49069 Query 106568 CTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGAC 106627 ||| ||||| || ||||||||||| || || || || || ||||| |||| ||| Sbjct 49070 GACTTGGCATTGCAGGCGTCCTTGTAGAGGATATATGGGGTGCCAGTCTCAATCTGCGAC 49129 Query 106628 TTGAGAATTGCCTTCCACACATCGGCGGC-TGGTACAATGGCGTTG-GCCCGTC-CCTCC 106684 | || ||| | ||| | ||| ||| | | |||| ||| | ||| ||| Sbjct 49130 TCGATAATGGAGAACCAGAGATCTTGGGCCTTG----ATGGTCTTGCGACCGAGACCTGG 49185 Query 106685 G----CCTCGTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCG-TCGGAGAGAC 106739 | ||||||| |||||||| || ||||| || ||| | || || | ||||| Sbjct 49186 GGTGGCCTCGTAGCGGGTGTAGAGAGCGCGGAACTCGTCTCCC-CAGCAATCAGCGAGAC 49244 Query 106740 CTGGTGCCTTGTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 106799 |||| |||| || ||||| || || | ||| | | |||| || |||| ||| | Sbjct 49245 CTGGGGCCTCGTTGGGACAAAAGAGTGTCCACTCGGCGTTGGCCTCGACACGCTCCATAA 49304 Query 106800 AAAGGTCTGGAATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTT 106859 | || || | | ||| |||| ||||||| || | || |||||| | || | Sbjct 49305 AGAGATCGGATACCCAGAGGGCGTAAAAGAGGTCACGGGCACGCATCTCTTCCTTTCCGT 49364 Query 106860 GGTTGAGTCGTAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTG 106919 |||| || | |||||||||||||||| ||| |||||||||||||| || |||| | Sbjct 49365 GGTTCTTGCGAAGGTCAAGGAACTCCATGACATCGGCGTGCCATGGCTCGAGGTAGATGG 49424 Query 106920 CGATAGATCCCTTTCG---ACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATA 106976 | | | |||||| || | || |||| | || ||||| || ||| |||| || | Sbjct 49425 CAAAGGCTCCCTTGCGCTTGCCACCTCCTTGGTCGACGTAGCGAGCAGTGTCGTTGAACA 49484 Query 106977 CGCGAAGCATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTAT 107036 |||||||||| |||| | ||| | ||| ||| || || || || || | || | Sbjct 49485 CGCGAAGCATGGGAACGAGACCGTTGGATGTACCGTTGGTGCCGCGGAT---ATATGAAC 49541 Query 107037 TGGC-TCTCACATCATGGATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTG 107091 ||| | | ||| || || || | ||||| || || ||| |||| ||||| | Sbjct 49542 GGGCAGCGCGGATCTTG--TGGACAGCGAGACCAATGCCTCCGGCCGACTTGGAGATGAG 49599 Query 107092 CGCACACTCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAG 107151 || || | | | || || | |||||||| | ||| ||||| ||||| | || ||| Sbjct 49600 GGCGCATTGCTTGAGGGTATCGTAGATACCATCGATCGAGTCATCCTTCATCTGGACAAG 49659 Query 107152 GAAGCAACTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTG 107211 |||||| ||||| || || || || | || ||||||||||| || ||||| Sbjct 49660 GAAGCACGACGACATTTGTGGCGAGCAGGTGCCCGAGTTAAAGAGGGTTGGGGTGGCGTG 49719 Query 107212 AATGAACATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCC 107271 | || | ||||| | || || || ||||| | | ||| |||||||| | || Sbjct 49720 GGTAAAGTAGCGCTGGGAAAGCTGCTCATAGGTCTCGATGGCAGCGTCAATGTCGGCGCC 49779 Query 107272 GTGGATGCCGATGGCCACACGCATAAACATGTATTGGGGTGTTTCCATGAGGATGCCATC 107331 |||||| || | | |||||||| | ||||| ||||| || |||| || | | || Sbjct 49780 GTGGATACCAAGAGAGACACGCATGAGCATGTGCTGGGGACGCTCAATGATGACGTCGTC 49839 Query 107332 GA 107333 || Sbjct 49840 GA 49841 >seq689 Length=46727 Score = 91.5 bits (100), Expect = 2e-13 Identities = 192/286 (67%), Gaps = 3/286 (1%) Strand=Plus/Minus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 |||||| || ||| | ||| || || ||| || | || || || ||| | || Sbjct 18313 GGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGTCAAACC 18254 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 |||||| | || |||||||| | |||| | || | ||||| || ||||| ||||| Sbjct 18253 TGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAAAAAGAT 18194 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGTGTCAAA 117452 |||||| || |||||||| | | |||||||| || || || |||| | | Sbjct 18193 ACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGAATTTGAG---AT 18137 Query 117453 CCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAA 117512 |||| ||| |||||| | |||||||||| | |||||| | ||| | ||||| | || Sbjct 18136 CCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTATGGCATTGAA 18077 Query 117513 TAACTGCTTCTTTTCAGATCCATCCTTAATGTATTTGTCAATCAAT 117558 || | ||||||| | || |||||| ||| | || || ||| Sbjct 18076 CAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAAT 18031 >seq47 Length=36934 Score = 84.2 bits (92), Expect = 3e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 9375 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 9434 |||||||| |||||||| | ||||||||| || | ||| || | |||||||| ||| Sbjct 33505 TCAATCTCGTCAATGAATATGATACATGGTGCGTTCTTGCGAGCAGTCTCAAAGAGCTCG 33446 Query 9435 CGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 || || | |||||||| ||||| ||||||||||| |||| Sbjct 33445 CGGACACGCTTGGCGCCGACACCGACAAACATCTCTTCAAA 33405 >seq104 Length=86770 Score = 82.4 bits (90), Expect = 9e-11 Identities = 203/302 (67%), Gaps = 11/302 (4%) Strand=Plus/Minus Query 9186 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9245 |||| ||||| || ||||| || | | || || | || |||||||| || || Sbjct 31690 ATCTGTCGATCGAAACGACCGGGTCTCAATAGAGCTTGGTCGAGGATATCTGGACGGTTT 31631 Query 9246 GTCGCGGCGATGACAACAATACCTGTTTCATT--ATCAAAACCATCCATCTCTGTCAAAA 9303 || ||||| | || |||| | | || | | | |||||||||||||||| | | Sbjct 31630 GTGGCGGCAAGTACTACAA--CGTTCTTGAGTGGAGTAAAACCATCCATCTCTACGAGCA 31573 Query 9304 GTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTG----GCATACCACCAGCACTGCGT 9359 ||||| | ||| | || || |||||||||| | | || ||||| | | | Sbjct 31572 ACTGGTTGAGAGTGTTCTCACGCTCATCATTCGATCCACTGAAT-CCACCTTTTCCTC-T 31515 Query 9360 TGCT-TTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGC 9418 |||| |||| | ||| |||||||| || || || ||||| |||||| | | | | || Sbjct 31514 TGCTCTTCCAATGGCGTCAATCTCGTCGATAAACACAATGCATGGTGCACTCTTTCTTGC 31455 Query 9419 GATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTT 9478 |||||||||||| || || || | || || |||||||||||||| ||||||| Sbjct 31454 CTGTTCAAAGAGATCACGTACTCTAGCTGGTCCAACTCCAACAAACATCTCTACAAAGTC 31395 Query 9479 TG 9480 || Sbjct 31394 TG 31393 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589877516486200