Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_014900.1 Length=40986 Score E Sequences producing significant alignments: (Bits) Value seq816 605 7e-169 seq1130 93.3 1e-14 seq2164 86.0 2e-12 >seq816 Length=14434 Score = 605 bits (670), Expect = 7e-169 Identities = 757/1028 (74%), Gaps = 10/1028 (1%) Strand=Plus/Minus Query 13068 CATCACCCGAATATCTCATCAGGCCATTAGCTGGCTAACCGTGCTTCCTATAGGTCTGCG 13127 ||| |||| || |||||||| | ||||| || ||||| |||||||| ||||||| Sbjct 5884 CATTACCCAAAAGCCTCATCAGCACGC-AGCTGATTATCCGTGTTTCCTATACGTCTGCG 5826 Query 13128 GCATGCTTCCAATCACCTTTCCAAAGACAAAAACCCTATTCATTTCATCTCTTTCAATTG 13187 |||| || ||||| ||||| || || | || |||| ||||| || ||| | || || | Sbjct 5825 GCATACTGCCAATAACCTTCCCGAAAATGAACACCCGGTTCATCTCGTCTTTCTCGATCG 5766 Query 13188 GGTCCCAAGCTGAATAACTCTTATTATCAGATATGACCAATAGTTTATCTTTCATCTTCT 13247 ||||||| | ||| || ||||| |||||||| || |||| ||| |||||||||||| | | Sbjct 5765 GGTCCCACGGTGAGTAGCTCTTGTTATCAGAGATAACCAGTAGCTTATCTTTCATCATTT 5706 Query 13248 GGAGCCGCTTAACATGTGCGGTATCGTCATAGAGGAAGGCGTATATCCCATCCCCATCGA 13307 | || ||||| ||||| || || ||||| || || || || || || ||||| || |||| Sbjct 5705 GCAGGCGCTTTACATGGGCTGTGTCGTCGTACAGAAACGCATAGATACCATCACCGTCGA 5646 Query 13308 AGTTTTTGATGCTTACGTCTACAAACAACAAATCTCCTGGTTCAATAGTTCCTGACATGC 13367 | ||| | | | || || |||| || ||| |||||||| || ||||||||||||| Sbjct 5645 AAGATTTAACCGTGATATCAACGAACAGCAGATCACCTGGTTCGATCGTTCCTGACATGC 5586 Query 13368 TATCCCCACGCACATTTATGATGCGGATATTTTCAGCCTTTCTACCATCAAACATGTGTC 13427 | || || ||||| || ||||||||||||||||| ||||| || ||||| |||||||| | Sbjct 5585 TGTCACCGCGCACGTTAATGATGCGGATATTTTCCGCCTTCCTGCCATCGAACATGTGAC 5526 Query 13428 TGGCATCGTCCTGCGAATACTCAACCGAGCGGAGTATTTCCACGAATTCTCGATTGATAA 13487 |||||||| ||| |||||||||||||| || | |||||| || || || ||||| | Sbjct 5525 GAGCATCGTCAAACGAGTACTCAACCGAGCGTAGAACTTCCACAAACTCACGGTTGATGA 5466 Query 13488 CGCCAGGACCCGCGCTTACTTCAAGATCTAGGATATCGAT-TTTAAATGTGTTTGATGAT 13546 | || || || || || ||||| | ||| || | || || || || | | || ||| Sbjct 5465 CACCCGGTCCGGCACTGACTTCTATATCAAGAACGTCAATCTTGAAGTATTTTGAATGGC 5406 Query 13547 GGAGATGC--GTTTATCGGAGTAGTT--CCATCTTTTTTCATAGGACCAATTCCGGTAGA 13602 || | || | || | || | ||| || || ||| |||| || || || || | || Sbjct 5405 TGACA-GCAGGCTTCCCTGA-TTGTTGACCGTCATTTCTCATCGGGCCTATGCCTGATGA 5348 Query 13603 CAACCATTCCGAACTAACACCTAACGCGTTTGCTATTTCAACAATCTTTGTTGACCCACG 13662 | |||||| | | |||||| || || || |||||||||||||| |||||||| || || Sbjct 5347 GAGCCATTCTGTTCGAACACCCAATGCATTAGCTATTTCAACAATTTTTGTTGAGCCGCG 5288 Query 13663 AGCGTTTCCACTTGTCAAACGCCAGATCGTTGGCTGAGCAACGCCTGACGCTTTAGCAAG 13722 ||||| || ||||||| | |||||| || || ||||| ||||| ||||| || ||||| Sbjct 5287 CGCGTTGCCGCTTGTCAGTCTCCAGATTGTGGGTTGAGCTACGCCAGACGCCTTTGCAAG 5228 Query 13723 AGCACCTTGAGACATACCAGCTAGTTCCATTGCCTTGTTGAGACGGTCAGAGAGAGTTTC 13782 ||| ||||||||||| |||| | ||||||| || ||| | || |||| |||||||| Sbjct 5227 AGCGCCTTGAGACATTCCAGATTGTTCCATCGCTAGGTTTAAGCGATCAGCAAGAGTTTC 5168 Query 13783 TTTTTTCATAATATTCAATTTATACGCTTGCGTATTAATGGTCAAAACACGTTTTGCTAT 13842 ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 5167 TTTTTTCATAAGTTTTAATTTATACGCTTGCGTATTGATGGTCAAAACACGTTTTGCTAT 5108 Query 13843 TGCTTTGATTAATACTCATTGCTATTATTTGTTGTGTGTTATACGAAAGGGAATAAGCAA 13902 ||||| | ||||||| ||||||||||||| || || |||| || ||||| || Sbjct 5107 TGCTTGGGTTAATACGCATTGCTATTATTCATTCATTGCAATACCAATAGGAATTGATAA 5048 Query 13903 TGACTAACAAAGCAATACAAAAAGCTGTTGCCATTGCAGGAAGCCAGCAAAAACTCGCCT 13962 |||| || || | || ||| || | ||| |||| || || || ||| || Sbjct 5047 TGACAAATCAAACCATTCAACTCGCAATCAGTATTACAGGTAGTCAAAAACGACTGGCAG 4988 Query 13963 CTTTGTGTGGAGTTAAGCAGCCAACTGTATGGCGTTGGTTACATGGTGGCGGCATTGACG 14022 | | || || || || || || || ||||||||| |||| |||||||| ||||| | Sbjct 4987 ATCTATGCGGTGTAGCCCAACCCACAGTTTGGCGTTGGCTACACGGTGGCGGAATTGATG 4928 Query 14023 CTAAGTATGTGGCAGCAATCGTAAAAGCTACAGGAGGAAGAATTAAAGCCAG-AGAACTT 14081 | ||||| ||| || ||| || || |||| |||||| |||| ||| || Sbjct 4927 CCCGCTATGTAATGAAAATTGTCTCAGCCACTGGTGGAAAGATTAAA-CCAGCAGATATT 4869 Query 14082 CGTCCTGA 14089 ||||| || Sbjct 4868 CGTCCCGA 4861 Score = 89.7 bits (98), Expect = 1e-13 Identities = 68/78 (87%), Gaps = 3/78 (4%) Strand=Plus/Minus Query 4641 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCATATGaaaaaaaTCCCCGCGAGTGCGAG 4700 ||||||||||||||||||||||||||||||||| || ||| |||||| || |||||||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 4701 GTT--TGTT-ATTGCTGC 4715 | | |||| |||||||| Sbjct 11190 GATGCTGTTCATTGCTGC 11173 >seq1130 Length=54118 Score = 93.3 bits (102), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 25460 TTTGAAGAGTTCCGCCTATATCATCGCGATGAGAACGGCAAGATTGTCAAGACCAACGAT 25519 ||||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 25520 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 25567 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3044 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3095 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 131011807883880