Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_015273.1 Length=32317 Score E Sequences producing significant alignments: (Bits) Value seq367 279 1e-70 >seq367 Length=135625 Score = 279 bits (308), Expect = 1e-70 Identities = 887/1353 (66%), Gaps = 37/1353 (3%) Strand=Plus/Minus Query 26190 CAGCTCGTCAAACAGTTCTATCCGAGCGCGGTCGCGCTCAACTATTCGCCCGAAATCAAG 26249 ||||| || || ||||||| |||| | | || ||| ||| || |||||| |||| Sbjct 46286 CAGCTGGTGAAGCAGTTCTTCCCGAACATCACCACGTTCAGCTACTCACCCGAAGTCAAA 46227 Query 26250 GGGCGTCTCGTGCTTAAGGGCTTGTCG--GTGATCGGCAAGGGCCGGCTCGAATTCGATG 26307 || || ||||| |||| ||| || || ||| || ||| |||| || ||||||| Sbjct 46226 ACCCGCCTGGTGCTGAAGG-CTTA-CGACGTCATCAAAAACGGCAGGCTGGAGTTCGATG 46169 Query 26308 CCGGTTGGACAGACCTAGCGCAATCCTTCATGGCCATTCGGAAAACCATGACGGCGAGCG 26367 | || ||||| || | ||||| || || ||||| || || ||||| || || || || Sbjct 46168 CGGGCTGGACGGATATGGCGCAGTCATTGATGGCTATCCGCAAAACAATCACCGCCTCCG 46109 Query 26368 GCCGAAAGGTGACATACGAGGCGAGCCGCAGCGAGGAAACCGGCCACGCCGATCTAGCGT 26427 | || | | | || ||| ||| | |||| || || || ||||| ||||| ||||||| Sbjct 46108 GGCGCATGTTCACTTACACGGCCGGTCGCACAGACGAGACGGGCCATGCCGACCTAGCGT 46049 Query 26428 GGGCGTGCCTGCACGCGCTCGATAACGAGCCGCTAGA-GGGCACGACCGCAAACAATACC 26486 ||||| | |||||||| | ||||| || || || ||||| |||| | || ||| Sbjct 46048 GGGCGCTGTTCCACGCGCTGCACAACGAACCCCTTGAAGGGCA-GACCACGGCGAACACC 45990 Query 26487 GGCTTTATGGAGTTCTCTTAATGAGCAAGCGTAAGCAGCGCAGC--AACTATCACGCGTC 26544 || |||||||||| || | ||||||| ||||||| ||| | | | || | || Sbjct 45989 GGATTTATGGAGTCCTACTGATGAGCAGACGTAAGC-GCGGAACCCAGCTGGCCACCGCT 45931 Query 26545 GAGC-AC-----GACGCCG----GCGGCCACGTCGACGCCGGCGCGCGCCGAGGCCTTCA 26594 ||| || || | | || ||| | | || |||| || | || || |||| Sbjct 45930 CAGCCACCCGTTGAAGGGGATTTGCTGCCGCCT-GAGTCCGGGCCG-GTTGAAGCGTTCA 45873 Query 26595 CCTTCGACGATCCTGTGCCGGTGATGGATCGCGCCGAAATTCTTGACTACGTGCAAGCGT 26654 | |||| ||||| | || ||| ||||| || || || || |||||| || | | Sbjct 45872 CTTTCGGTGATCCCGCTCCCGTGTTGGATAGCCGGGAGATCCTCGACTACCTGGAGTGCT 45813 Query 26655 ATGCGATCGGCGATTGGTATGAGCCGCCGGTGTC-ATGGGCGGGCCTTGCAAAGACGTTT 26713 || | ||| ||||| ||| | ||| |||| |||| ||| ||| || || ||| Sbjct 45812 GGGCCAATGGCCGTTGGTTTGAAACACCGATGTCCATGGACGG-CCTGGCGAAAACGACC 45754 Query 26714 CGCGCCGGCGTGCATCACGGGTCGGCGATCTACTTCAAACGCAATGTG-TTGTCGTCGAC 26772 || ||| ||||| | | | ||||| | | ||||||| ||||| || ||| | | || Sbjct 45753 CGGGCCAGCGTGTACCTCCAGTCGG-GCTGAACTTCAAGCGCAACATGCTTGCCCGC-AC 45696 Query 26773 GTTCATCCCGCACAAGTTGCTCACGCGCGAAGAATTCGACAAGTGGGCGCTCGATTTCCT 26832 |||| | || ||| | || | | ||| ||| || || ||| || || || | || Sbjct 45695 GTTCGTTCCCCACCGGCTGTTGAGTCGCCAAGCCTTTGAGCAGTTCGCCCTGGACTGGCT 45636 Query 26833 CACGTTCGGCAATGGGTACATCGAGCGGCGAAAGGCAAGGATCGGCAATACGCTCGCGCT 26892 | || ||||| | ||| | || ||| || | | || |||| || | | || Sbjct 45635 CTGGTGTGGCAACTGCTACCTGGAAAAGCGCAACAACATGCTCCGCAACACCATGGGCCT 45576 Query 26893 CAAACGCGCGCCGTCGAAATNNNNNNNNNNNNNNNCCGACTTGCAACGCTTCGTGCAGCT 26952 | | | | |||| | ||| || | || ||| | Sbjct 45575 GCTGCCTCCACTGGCGAAGTACATGCGCCGGGGTGTGGACATGGAGACCTATTACCAGGT 45516 Query 26953 CAACGGCTATCAACAGATCGAATATGAGTTCGAGCCGGGTTCGGTGCATCACTTGATGGA 27012 |||| | | |||| |||| || | || |||||| | |||||| || Sbjct 45515 GCGTGGCTGGAAGGA---CGAACATGAATTTGCCCCCGGTTCGATCTGCCACTTGCGCGA 45459 Query 27013 ACCCGACATTAATCAAGAGGTGTACGGCTTGCCCGAATATCTCGGCGCGCTGCACTCGGC 27072 |||| || || || || | |||||| |||| || | || | |||||||| || Sbjct 45458 GGCCGATATCAACCAGGAAATCTACGGCCTGCCGGAGTGGCTGGCAGCGCTGCAAAGCGC 45399 Query 27073 ATGGTTGAACGAGTCGGCGACGCTCTTTCGTCGCAAGTATTACGAGAATGGATCGCACGC 27132 | | | |||||| || ||||| || || |||||||| ||| | || || || || Sbjct 45398 ACTGCTCAACGAGAGCGCCACGCTGTTCCGGCGCAAGTACTACAACAACGGCAGCCATGC 45339 Query 27133 CGGTTTCATCCTGTACATGACCGATGCGGCGCA-AAGTCAAAGCGATGTCGACAAGATGC 27191 ||||||||| |||||||||||||| |||||||| ||| | || || ||||| ||| Sbjct 45338 CGGTTTCATTCTGTACATGACCGACGCGGCGCAGAAGGAAGAG-GACATCGACTCACTGC 45280 Query 27192 GCGAGGCGTTGAAGAACAGCAAGGGGCCGGGGAATTTCCGAAACCTTTTCATGTACGCGC 27251 || || |||||||| || ||||| || || || || ||||| || ||||||||| Sbjct 45279 GCACCGCACTGAAGAACTCGAAAGGGCCAGGCAACTTTCGCAACCTGTTTGTGTACGCGC 45220 Query 27252 CGAACGGCAAGAAAGACGGCATCCAGCTCATTCCGGTTTCCGAGGTCACGGCGAAAGACG 27311 || ||||||||||||||||| |||||||| ||||| |||||| |||| || |||| Sbjct 45219 CGGCAGGCAAGAAAGACGGCATTCAGCTCATCCCGGTGAGCGAGGTTGCGGCCAAGGACG 45160 Query 27312 AGTTCTTCAACATCAAGAATGTCACGCGCGACGACTTGCTCGCGGCGCATCGCATCCCGC 27371 | ||| | ||||| || ||| || ||||| ||||||||||| ||||| || | Sbjct 45159 AATTCAGCTCGATCAAAAACATCAGCCGTGACGATCTGCTCGCGGCGTTGCGCATTCCAC 45100 Query 27372 CTCAGCTCATGGGGATCGTGCCGAGCAATACCGGCGGATTCGG--CGCAACGGACAAGGC 27429 | ||| | ||||| ||||||||| || | ||||| || || || ||| |||| Sbjct 45099 CGCAGTTGATGGGCATCGTGCCGCAGAACGCGGGCGGTTTTGGGTCGTTGCGG--GAGGC 45042 Query 27430 CGCCGAGGTGTTCGGC-GTGAATGAAATCGCGCCCCTGCAACGGCGCTTTGAACAGCTCA 27488 || ||||| || ||| || || || | | ||| |||| | | | | ||| ||| Sbjct 45041 TGCTGAGGT-TTGGGCGGTCAACGAGCTGGAGCCGTTGCAGGCGAGGCTGGCCCAGGTCA 44983 Query 27489 ACGAGTGGATCGGCGACGAGGTTGTGCGCTTCA 27521 |||||||| | || || |||||||| | |||| Sbjct 44982 ACGAGTGGCTGGGTGAAGAGGTTGTCAGGTTCA 44950 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 103275621438990