Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq328 95.1 1e-14 seq4360 84.2 2e-11 >seq328 Length=55360 Score = 95.1 bits (104), Expect = 1e-14 Identities = 107/139 (77%), Gaps = 6/139 (4%) Strand=Plus/Plus Query 22483 TAGCTCAGTT-GGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAGTCTCCTA 22541 |||| |||| ||||| |||||||||||| ||||||||||||||||||||| || ||| Sbjct 54050 TAGCGCAGTCCGGTAGCGCGCCTGCTTTGGGAGCAGGATGTCAGGAGTTCGAATCCCCTT 54109 Query 22542 TTCTCCACTCAAT---CCTCTTTAGCTCAG-CGGTAGAGCGGTTGACTGTTAATCAATTG 22597 | | || || || ||||||||| |||||||| |||| || |||| |||||| Sbjct 54110 ACCCCGACCATATTTGGGTCGTTAGCTCAGTTGGTAGAGCAGTTGGCTTTTAACCAATTG 54169 Query 22598 GTCCCTGGTTCG-ATCCCA 22615 ||| |||||| |||||| Sbjct 54170 GTCGTAGGTTCGAATCCCA 54188 >seq4360 Length=8905 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 22476 GGGGAATTAGCTCAGTTGGTAGAGCGCCTGCTTTGCAAGCAGGATGTCAGGAGTTCGAGT 22535 |||| ||||||||||||||||||||| ||||||||| |||||||||||||||| | Sbjct 7445 GGGGCCTTAGCTCAGTTGGTAGAGCGCTGCCTTTGCAAGGCAGATGTCAGGAGTTCGAAT 7386 Query 22536 CTCCTATTCTCCAC 22549 |||||| |||||| Sbjct 7385 CTCCTAGGCTCCAC 7372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560509858562000