Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_015295.1 Length=47279 Score E Sequences producing significant alignments: (Bits) Value seq400 390 3e-104 seq29 113 1e-20 seq685 87.8 5e-13 seq909 84.2 7e-12 >seq400 Length=38681 Score = 390 bits (432), Expect = 3e-104 Identities = 761/1104 (69%), Gaps = 25/1104 (2%) Strand=Plus/Plus Query 29850 ACTGCGTTAACGAGCTGTGCTTCATAGCCCAAAGTGCCGTTTACAAGGTGTGTTTTTTGA 29909 || ||||| || ||||| |||||||| || | |||||||| || | |||||||| || Sbjct 37287 ACCGCGTTTACCAGCTGCGCTTCATAACCAAGCGTGCCGTTAACCACATGTGTTTTCTGC 37346 Query 29910 GCCACGGCGAAGGGATTCATTCCCCACTGCGCGGCCTGTAGCGCAACCGCCAGGCAATCA 29969 ||||| ||||| || ||||| ||||||||||| ||||| | | || |||||||| ||| Sbjct 37347 GCCACAGCGAACGGGTTCATGCCCCACTGCGCCGCCTGCATGGTCACAGCCAGGCAGTCA 37406 Query 29970 GCAGGCTTCCCGGCGAGGTGGGCGGGTACTGTTGTTCTGCCCTGCGCCATGACCTCGGC- 30028 |||||||| || || ||||| || || || || | | | | ||||| | || Sbjct 37407 GCAGGCTTTCCTGCCAGGTGCGCAGGAACGGTGGCCTTACTGTCAGCCATCAGGGTTGCG 37466 Query 30029 AAACGCCTGTAGTTTTTGCA-GTCCTGACGGGCTAAATATTGCCGCTTTTGTGTC---GG 30084 |||||| || | || | ||| | ||||| || |||||||| ||| | || Sbjct 37467 AAACGCACC-AGGCGGTCCATGCCCTCA-GGGCTGAAGATTGCCGCAGCGGTGCCAACGG 37524 Query 30085 CCTCATTAGCCGGAC-TGTGAA--CAATTTCAGTGCTCATACGTA---ATCCTTTTTCTT 30138 | || | | ||||| | || || |||||||||||| ||||| ||| Sbjct 37525 TTGCGCCAGGCTGCGATGTGATTGCGATGTCGTTGCTCATACGTACATATCCTGTTTGCG 37584 Query 30139 CGCCCAGGCTGGGCGTGTGATTTCTTCAATGCCGCCCCA---GCTATCACTAACCCGGCA 30195 ||||| | |||||| |||| ||||| || ||||| || | ||| || |||| Sbjct 37585 TGCCCACTCGGGGCGTTTGATAATTTCAAATCCACCCCATTCGCCAG-ACTCAC--GGCA 37641 Query 30196 TTCGTGGTATGTGTTCAGACTGTTGCGGAATAAATCATGGCCTGTTGCCACATCATCCGC 30255 | |||||| || |||||| |||||| | |||| || | | || || | || Sbjct 37642 CTGGTGGTAGGTATTCAGATCCCGGCGGAACAGTGCATGCCCGGCGTCAACGTCCTGTGC 37701 Query 30256 AGCGAGCTGGAACGTCCGCACGGGATATCGACCGCAGTTGATCGTCTCGCTCACGGCAAT 30315 | | || | ||| ||||| || || || ||||||| ||| || |||||||| || | Sbjct 37702 ATCCAGTTCGAAAACGCGCACCGGGTAGCGGCCGCAGTCGATGGTTTCGCTCACTGCCAG 37761 Query 30316 AAAAATAAACATGGGATATTCGCCGAAGTGCTTCAGATACCCTTCGCGGTACATGGCGTC 30375 |||| || | | || ||| | || | | |||||||||||||||||||| Sbjct 37762 GAAAAAGAATCCGTGCGGCTCACCGGTGGTCTGCTGCGCGCCTTCGCGGTACATGGCGTC 37821 Query 30376 TTGCATGTGATAGCGGAATTCTTCGACATGTCGCGGGAATCGCTCCATATCTGCAACTTT 30435 || | ||| || |||||||| |||| || || | ||| |||||||| || ||||| || Sbjct 37822 CTGAACGTGGTACCGGAATTCCTCGATGTGGCGGGAGAACCGCTCCATGTCCGCAACCTT 37881 Query 30436 TTTCACGTCAACAACAACTGGCTGGCTAGTTAGAAACTTATCCGGCCTGAAT-CTGCACA 30494 || ||||| | | ||| || || | | || ||||||||| | |||| | ||||| Sbjct 37882 CTTTACGTCCAGCAGAACCGGATGATTCTTCAGGCGCTTATCCGGGC-GAATGCGGCACA 37940 Query 30495 GCTCCCCGGTTTCGTCATCATTCCAGTAGATAGAAGACTCGCAATGCCCGTCTGCCTCCA 30554 |||| |||||||| ||| |||||||| || | ||||| || || ||||| | Sbjct 37941 GCTCTCCGGTTTCCGAATCCGTCCAGTAGTGCGACGCTTCGCAGAAACCTTCCGCCTCAA 38000 Query 30555 GCAACCACCGTGCGGCGGGGTGGGATAGAGCACTCTCTCGCATTAACTTTAGCTTTATGC 30614 | | ||| || || || || |||| | || || || ||||| | || ||||| || Sbjct 38001 GAAGCCAGCGCGCCGCCGGATGGGCCATCGCGCTGTCACGCATAAGATTCAGCTTGCGGC 38060 Query 30615 CTTGCTCTGCATCCATAACCGTCATTCCAGATCTT-TCACAATCCCGGAGAAACCTGGCT 30673 | || || ||||||||||||||||| || || || || ||| || ||| ||| Sbjct 38061 CCTGTTCGGCATCCATAACCGTCATGCC-CATGTTCTCGACATCTTTCAGGAACGCTGCT 38119 Query 30674 TCTTCTTCCTTTCCTGC-GCTGGTCCGCCTGTTTACGTCTGGCCCCACAACAAAACGCTT 30732 || || || ||||| || ||| || || | ||| | | ||| |||| | |||||||| Sbjct 38120 TCATCCTCTTTTCCGGCTGCT-GTGCGGCGGTTGAACTGCGGCGCCACGATGAAACGCTT 38178 Query 30733 ATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCAGTACCCATATCCAGCGCTTT 30792 ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| Sbjct 38179 ATCGAACTCTTCCGGCTCCAGCAGCAGGCAGTGCAGGGCGGTGCCCATATCCAGCGCTTT 38238 Query 30793 CATCTTTTCAGTATCTACTGGCGCGCTTTTTCGCCACTTATATACTGCCGGGTTTGTAGC 30852 || |||||| || || || ||||| ||| |||| | | |||||| | || Sbjct 38239 CAGCTTTTCGGTGTCGACCGGCGCTGATTTCTGCCATTGCAGCAGGGCCGGGCTCAACGC 38298 Query 30853 TATATCATCGAGCTGGGACTTGCTTACACCTGCCCCAGAATGATAATCCTCGTTAGAAAT 30912 | ||| ||||| ||||| || || || | || || || ||||||||||| || Sbjct 38299 AACCATATCCAGCTGCGACTTACTCACGCCGTCTCCGGAGTGGTAATCCTCGTTGCTGAT 38358 Query 30913 GTCGTAATAAATGCCAGGTTCCAT 30936 |||| | ||||| || || | ||| Sbjct 38359 GTCGAAGTAAATTCCTGGCTTCAT 38382 >seq29 Length=371730 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| || || || ||||||||| | || |||| ||| | ||||| | | ||| Sbjct 206208 CTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAG 206267 Query 37657 CAGCGTGCAAACAAGCGACCGTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||||| | ||||| || ||| ||| ||||||| || || || || | ||||||||| Sbjct 206268 CAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAG 206327 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAGATG 37776 || ||||| ||||| | | || || || |||||| ||| ||||| |||| ||| Sbjct 206328 GATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCAT 206387 Query 37777 AAAGGCGTCACTGAAATCAT 37796 |||||| || |||||||||| Sbjct 206388 AAAGGCATCGCTGAAATCAT 206407 >seq685 Length=77197 Score = 87.8 bits (96), Expect = 5e-13 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 37598 TGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAGC 37657 |||| |||||||| ||||| || || || | || |||||| ||| | | |||| Sbjct 14354 TGGCCAAAGAGTTCAATTGCCCCGTCATCGCGCTATCGCAGTTGTCCCGCCAGTGTGAGC 14295 Query 37658 AGCGTGCAAACAAGCGACC-GTGCAATGCCGACTTACGTGAGTCGGGCGTAATCGAGCAG 37716 |||| | |||||||| || ||| || || ||||| || ||||| |||| ||||||||| Sbjct 14294 AGCGGCCCAACAAGCGCCCTGTG-AACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAG 14236 Query 37717 GAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCCGCAGACAGAG 37773 || || || | || | | || ||||| |||||| ||||||||| | || ||| Sbjct 14235 GACGCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAG 14179 >seq909 Length=21192 Score = 84.2 bits (92), Expect = 7e-12 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 37597 CTGGCGAAAGAGTTACGCTGCCCGGTTATAGCATTGTCTCAGTTGAACCGTAATTTGGAG 37656 ||||| ||||| | ||||||| || || || |||| ||| ||||||| |||| Sbjct 7751 CTGGCAAAAGAACTCGGCTGCCCCGTGATCGCGCTGTCCCAGCTGAACCGCTCGCTGGAA 7810 Query 37657 CAGCGTGCAAACAAGCGACC-GTGCAATG-CCGACTTACGTGAGTCGGGCGTAATCGAGC 37714 || || | || || || || ||| ||| ||||||| || || ||||||| ||||||| Sbjct 7811 CAACGCCCGAATAAACGTCCCGTG--ATGTCCGACTTGCGCGAATCGGGCGCTATCGAGC 7868 Query 37715 AGGAAGCTGATGTGATTTTCATGGTTTATCGCGACGAGAAGTACAACCC 37763 |||| || || ||||| | | |||| ||||||||| ||| ||||| Sbjct 7869 AGGATGCCGACGTGATCCTGTTCATTTACCGCGACGAGGTGTATAACCC 7917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151146058812210