Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq420 165 2e-35 seq593 156 9e-33 seq48 149 1e-30 seq456 131 4e-25 seq79 118 2e-21 seq1674 102 2e-16 seq13574 87.8 4e-12 >seq420 Length=40905 Score = 165 bits (182), Expect = 2e-35 Identities = 163/211 (77%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||||||||| |||||||| ||||| |||| ||||| | ||||| || Sbjct 13792 AACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTC 13851 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 ||| ||||| || || ||||| || |||||||| || || || || ||||| |||||||| Sbjct 13852 GAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 13911 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| || || || |||||||| || | ||| || || || || | ||||| Sbjct 13912 GATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTT 13971 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||| |||||||| || ||||| | |||||| Sbjct 13972 TCCAGTCAAAGTCTTGACGAAAATCTGCATT 14002 Score = 156 bits (172), Expect = 9e-33 Identities = 163/213 (77%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||||||||| |||||||| ||||| |||| ||| || | || || || || || Sbjct 14026 GTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAGGGTACGTCCGTCCTCTAGTTG 14085 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| |||| |||||| || || || || ||||| |||||||| || || Sbjct 14086 CTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTT 14145 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || |||||||| || | || || ||||| || | ||||| || || Sbjct 14146 GGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGACCTCAAGTGTGATGGTCTTGCCAGT 14205 Query 195117 CAAAGTTTTTACGAACACTTGCATTTATGGTTA 195149 ||| || || || || | ||||| ||||| ||| Sbjct 14206 CAATGTCTTGACAAAGATTTGCA-TTATGATTA 14237 Score = 145 bits (160), Expect = 2e-29 Identities = 155/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||||||||| || ||||| || | || || | ||||| ||||| || Sbjct 13570 GTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTG 13629 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || |||||||| |||||||| || || ||||| || || || |||||||| || Sbjct 13630 CTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGAATCTT 13689 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||| || || | || || || | ||||| ||||| || || Sbjct 13690 GGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTGCCAGT 13749 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 13750 GAGAGTCTTGACGAAAATCTGCATT 13774 Score = 143 bits (158), Expect = 6e-29 Identities = 154/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||||||||| || ||||| || | || || | ||||| || || ||| Sbjct 13343 TGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGTTGC 13402 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| |||||||| ||||| || || || ||||| |||||||| || || Sbjct 13403 TTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATCTTG 13462 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || |||||||| || | || || || | ||||| |||||||| || Sbjct 13463 GTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTTCCAGTG 13522 Query 195118 AAAGTTTTTACGAACACTTGCATT 195141 | ||| || ||||| | |||||| Sbjct 13523 AGAGTCTTGACGAAAATCTGCATT 13546 >seq593 Length=58250 Score = 156 bits (172), Expect = 9e-33 Identities = 157/204 (77%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| || || |||||||| ||||| || | || || | ||||| ||||| || Sbjct 29352 GTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGTTG 29293 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || |||||||| || || || || ||||| ||||||||||| || Sbjct 29292 CTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTT 29233 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 |||||| || || |||||||| || | || ||||| ||||| | |||||||| || Sbjct 29232 GGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTTCCAGT 29173 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| || | |||||| Sbjct 29172 CAAGGTCTTTACAAAGATTTGCAT 29149 Score = 136 bits (150), Expect = 9e-27 Identities = 152/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||| || || |||||||| ||||| |||| || || | ||||| ||||| ||| Sbjct 29579 TGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAGAGGGTGCGGCCATCCTCGAGTTGC 29520 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||| || |||| |||||| || || ||||| ||||| ||||||||||| || Sbjct 29519 TTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGAATCTTG 29460 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || || || |||||||| || | || ||||| | |||| ||||| || || Sbjct 29459 GTCTTAACATTGTCGATGGTGTCAGATCCCTCGACTTCCAAAGTAATAGTCTTGCCAGTG 29400 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | || ||||| || | |||||| Sbjct 29399 AGGGTCTTTACAAATATTTGCAT 29377 >seq48 Length=44992 Score = 149 bits (164), Expect = 1e-30 Identities = 156/205 (76%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| |||||||| ||||| || | || || | ||||| |||||||| Sbjct 22835 GTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCGAGCTG 22776 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || ||||| || || |||||||| || || || || ||||| ||||||||||| || Sbjct 22775 CTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGAATCTT 22716 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || ||||| || || | || || || | |||| ||||| || || Sbjct 22715 GGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTGCCAGT 22656 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 | ||| |||||||| | |||||| Sbjct 22655 GAGAGTCTTTACGAAAATCTGCATT 22631 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| |||||||| ||||| |||| | || | ||||| ||||||||| Sbjct 22606 TGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCGAGCTGC 22547 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| |||| |||||| || || || || ||||| |||||||| || || Sbjct 22546 TTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGGATCTTG 22487 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 |||||| || || |||||||| || | || ||||| | ||| | ||||| || || Sbjct 22486 GTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTGCCAGTG 22427 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | ||||| Sbjct 22426 AGAGTCTTGACGAAAATCTGCAT 22404 Score = 136 bits (150), Expect = 9e-27 Identities = 153/205 (75%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||||||||| ||||| |||||||| || || |||| ||||| | || || ||||| || Sbjct 22379 GTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCGAGTTG 22320 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || || ||||| || ||||| || || || |||||||| || ||||||||||| || Sbjct 22319 CTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGAATCTT 22260 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| || || || ||||| || || | || || || || || | |||||||| || Sbjct 22259 GGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTTTCCAGT 22200 Query 195117 CAAAGTTTTTACGAACACTTGCATT 195141 ||| || || || || | |||||| Sbjct 22199 CAATGTCTTGACAAAGATCTGCATT 22175 >seq456 Length=67341 Score = 131 bits (144), Expect = 4e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||| ||||| ||||| ||||| || |||||||| | ||| || | || || || Sbjct 21373 AACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTC 21432 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||| || || ||||| | ||||| || || || || || || || |||||||| Sbjct 21433 CAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTG 21492 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || |||||| |||||||||||||| || | || || || ||||| | ||||| Sbjct 21493 GATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTT 21552 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| ||||| || || || | ||||| Sbjct 21553 TCCTGTTAAAGTCTTAACAAAGATCTGCAT 21582 >seq79 Length=127859 Score = 118 bits (130), Expect = 2e-21 Identities = 133/178 (75%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| ||||| ||||| ||||| || |||||||| | ||| || | ||||| || | || Sbjct 118825 GTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTGCGGCCATCCTCCAATTG 118766 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | ||||| || || || || || || || |||||||| || || Sbjct 118765 CTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGGATCTT 118706 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCT 195114 |||||||||||| ||||| || || | || || || ||||||| ||||| ||| Sbjct 118705 AGCCTTGACGTTCTCGATGGTATCGGATCCCTCTACCTCGAGGGTAATGGTCTTACCT 118648 >seq1674 Length=6646 Score = 102 bits (112), Expect = 2e-16 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 || ||||||||||| ||||| || |||||||| | ||| || | || || ||||| ||| Sbjct 125 TGGAGAGTGGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGTCCGTCCTCGAGTTGC 66 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 || || ||||| ||||| |||||||| || || || || ||||| |||||||| || || Sbjct 65 TTTCCGGCGAAAATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTGGATCTT 7 >seq13574 Length=204 Score = 87.8 bits (96), Expect = 4e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 |||||||| || ||||| |||||||| ||||| ||||| |||||||||||||||||||| Sbjct 88 TTACCTGCAAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATTTTG 29 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGA 195083 || || || ||||| ||||| || Sbjct 28 GCTTTAACATTTTCAATAGTGTCAGA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109282515661835