Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq456 107 1e-18 seq593 105 4e-18 seq420 105 4e-18 seq48 96.9 2e-15 seq1623 87.8 1e-12 >seq456 Length=67341 Score = 107 bits (118), Expect = 1e-18 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 ||||||||| | || || || || ||||| || ||||||||| | || | || || Sbjct 21373 AACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTC 21432 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||||||||| || | |||||||| || | || | ||||||||||| Sbjct 21433 CAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTG 21492 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||| ||||| || || || | ||| ||||||| |||| ||| ||||| Sbjct 21493 GATCTTGGCCTTGAC--ATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTC 21550 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 ||||| || | |||||| |||||||||||||| || Sbjct 21551 TTTCCTGTTAAAGTCTTAACAAAGATCTGCATGTT 21585 >seq593 Length=58250 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||| || |||||||| ||||| || ||| | || |||| || Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||||||||| || || ||||| || || | || | || |||||||| | Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 29238 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| ||||| || | ||||| ||| ||||||| || | ||| ||||| Sbjct 29237 ATCTTGGTCTTGAC--AT--TGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGT 29182 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | ||||| |||||||| |||||| Sbjct 29181 CTTTCCAGTCAAGGTCTTTACAAAGATTTGCATA 29148 Score = 100 bits (110), Expect = 2e-16 Identities = 141/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || || |||||||| ||||| ||||| | || |||| || || || ||||||||||| Sbjct 29795 TCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAG 29736 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || || ||||| || || | || | ||||||||||| ||||| ||||| || Sbjct 29735 ATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTTGTCCTGGATCTTGGTCTTGAC--AT 29678 Query 34911 GCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTT 34966 ||||||| ||| | |||| || || | ||| || || || || || |||||||| Sbjct 29677 --TATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAATAGTCTTGCCAGTAAGAGTCTT 29620 Query 34967 CACAAAGATCTGCATA 34982 |||||||| |||||| Sbjct 29619 TACAAAGATTTGCATA 29604 Score = 96.9 bits (106), Expect = 2e-15 Identities = 150/214 (70%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 ||||| |||| || || || |||||||| ||||| || ||| | || |||| || Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||||||||| || || ||||| || || | || | || |||||||| Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 34893 ATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || | ||||||| ||| ||||||| || | ||| ||||| Sbjct 29009 ATCTTGGTCTTTAC----GTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGT 28954 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || |||||||| |||||||| |||||| Sbjct 28953 CTTACCAGTAAGAGTCTTTACAAAGATTTGCATA 28920 >seq420 Length=40905 Score = 105 bits (116), Expect = 4e-18 Identities = 153/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || ||||| || ||||| ||||| || ||| | || |||| || Sbjct 13336 AACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTC 13395 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || || || ||||| ||||||||||||||||| | || | || |||||||| Sbjct 13396 AAGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTG 13455 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || | ||||| || ||||||| || | ||| |||| Sbjct 13456 GATCTTGGTCTTGAC--AT--TGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGG 13511 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | ||||| ||||||||||| || || |||||||| Sbjct 13512 TCTTTCCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 98.7 bits (108), Expect = 6e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || ||||| || ||||| ||||| || ||| | || |||| || Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || || |||||||| || || ||||| || || | || | |||||||| || | Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | ||| ||||||| || | ||| || || || Sbjct 13685 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTG 13744 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| || || |||||||| Sbjct 13745 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 >seq48 Length=44992 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/215 (71%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || || |||||||||||||| || || | || | || || Sbjct 22384 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCG 22325 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 || || ||||||||||| || || |||||||| || | || | ||||||||||| | Sbjct 22324 AGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGA 22265 Query 34893 ATCT---TCTGT---TTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 |||| ||| | ||| | |||| |||| || |||| || || | || ||| Sbjct 22264 ATCTTGGTCTTTACATTGTC-GATGGTATCAGATC-----CCTCGACCTCCAGTGTGATG 22211 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| || | ||||| |||||||||||||| Sbjct 22210 GTCTTTCCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 89.7 bits (98), Expect = 3e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||||| || || || |||||||| ||||| || ||| | || |||| || Sbjct 22840 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 22781 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || || || || || || ||||| || || | || | || |||||||| | Sbjct 22780 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 22721 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | ||| ||||||| || | || || || || Sbjct 22720 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTG 22661 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||||||||| || || |||||||| Sbjct 22660 CCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 Score = 82.4 bits (90), Expect = 5e-11 Identities = 148/214 (69%), Gaps = 8/214 (4%) Strand=Plus/Minus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || || || |||||||| ||||| || | | || |||| || Sbjct 22613 AACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTC 22554 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || |||||||| || |||| ||| || || | || | || |||||||| Sbjct 22553 GAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTG 22494 Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT----TCACCGGCCTCAACATCGACGGTTATGG 34947 ||||| ||||| || ||||||| || | |||| || || | ||| || | Sbjct 22493 GATCTTGGTCTTGAC--AT--TATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAG 22438 Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 | || || ||||||||||| || || |||||||| Sbjct 22437 TCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 >seq1623 Length=5066 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/211 (69%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || || || || ||||| ||||| ||||| | || |||| || Sbjct 119 AACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAAAGAGTACGACCATCCTC 178 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 || || ||||||||||| || || ||||| || || | || | || |||||||| Sbjct 179 AAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGGATTCCTTCCTTGTCTTG 238 Query 34892 AATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTT 34951 ||||| || ||| | || | ||| | ||||||| || | ||| ||||| || Sbjct 239 GATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACCTCCAAGGTGATGGTCTT 298 Query 34952 TCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || || || || || |||||||| |||||| Sbjct 299 ACCAGTCAGGGTTTTAACAAAGATTTGCATA 329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324578189609640