Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq98 226 3e-54 seq531 181 1e-40 seq689 122 1e-22 >seq98 Length=772300 Score = 226 bits (250), Expect = 3e-54 Identities = 654/992 (66%), Gaps = 22/992 (2%) Strand=Plus/Plus Query 18584 TATATTTTAGTTGATTGTTATGTTATGGTTAAAAATCAACATCCAAAGAAAAAG---AA- 18639 |||| |||||| | || || | | | |||||||||| |||||| || || | || Sbjct 410011 TATACTTTAGT-GTTTCTTTGGCTGGGCTTAAAAATCATCATCCAGGGAGAAGGCCGAAG 410069 Query 18640 --TTCTCTTCATTAGAATTCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAA 18697 || ||||| |||| ||| || || |||||||||| || | || | ||| |||| Sbjct 410070 CTTTATCTTCCGTAGAGGTCAACACCCCGCTTTTTTGATAATCACCCACACGTTTCTCAA 410129 Query 18698 AGAAATTAGTTTTTCCCTCTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACA 18756 ||||||| ||||| || | | || || ||| |||||||||||||| ||||| | || Sbjct 410130 AGAAATTGGTTTTGCCTTGCAGGGAGAT-CATCTCCATAAAATCAAACGGATTGGTGGCA 410188 Query 18757 TTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATA- 18815 | ||||||||| | | || | ||| || ||| || || ||||| | |||||| Sbjct 410189 TGATATATTTTGGTATAACCCAGTTCCTGCAGCCATCTGTCTGCAACAAACTCAATATAC 410248 Query 18816 TGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAA 18875 |||| ||||| | |||||| || || | ||| || | |||||||||| ||| Sbjct 410249 TGTG-ACATCAGTTTTGCATTCATCCCGATCAGGGCAACCGGCAAGGCATCTGTAATAAA 410307 Query 18876 TTCTTGTTCTATATTTACTGCCTCTGATATAA-TAGATACAACTCTATCTTCATTAGGAG 18934 ||| | ||| || | ||| || || |||| | || | || || | || Sbjct 410308 TTCCTTTTCGATTTCTACCGCGTCGCGGATAATTCCATGAACGACTTCCTGGCTCAGTTT 410367 Query 18935 GGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTAC 18994 | | || || |||| | | || || ||||| |||||||| | ||||| ||||| Sbjct 410368 ATTTTTGAGCAT-TTTATAAAGCAGGCAGGCAAATTCACAATGCATCCCCTCATCTCTGG 410426 Query 18995 TTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATA 19054 ||||| |||||| ||| |||| || |||||||| ||||||||||| |||||||| | Sbjct 410427 AAATCAACTCATTACTAAAGGTTAGCCCTGGCATCAGGCCTCTTTTTTTCAACCAGAAGA 410486 Query 19055 TAGAAGCAAATGATCCAG-AAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTT 19113 | ||| || | | ||| | ||||| || ||||| ||||| || ||||| || | | | Sbjct 410487 TCGAA-CAGAAGCTCCCGCTGAAGAAAATGCCTTCCACTGCGGCGAAAGCCACCAAACGT 410545 Query 19114 TCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTT 19173 || || || | | | | |||||| || |||||| || || || || ||| Sbjct 410546 TCGGCAAAATTTCCGCC------CTCAATCCAGCGCAATGCCCATTCTGCTTTTTTCTTT 410599 Query 19174 ACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACA 19233 ||||| || | ||||||| | || || || || || | |||||||| | Sbjct 410600 ACACAAGGAACCGTCTCTACGGCATGGAACAGCCTGTCTTTTTCTTCAGGATCTTTAATA 410659 Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 || | ||| |||| | || |||| || || || ||||| || ||||| || Sbjct 410660 TAGGTATCGATCAGCAGCGCATAGGTTTCAGAGTGGATGTTTTCCATCATGATCTGGAAG 410719 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || |||||||| | ||||| | | ||||||||| || || | | | | ||| Sbjct 410720 CCATAAAAACAACGGGCTTCGGGAAGCTGTACTTCGCTCATGAAGTTCACTGCAAGGTTT 410779 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||||| || || || ||||| || |||||||| || | || ||| ||| ||||| Sbjct 410780 TCATTTACAATGCCGTCACTTGCAGCAAAAAAAGCAAGTATATGAGAAATGAAATGACGC 410839 Query 19414 TCATCTGAGGTTAATGTATTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAACT 19473 || ||| |||| | | ||| | || || | ||| | || | ||||||| | Sbjct 410840 TCGCCTGTATTTAAGTTGTCCCAGTGCTTCTGGTCATCAGAAAGGTCAATTTCTTCAGCG 410899 Query 19474 GTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGA 19533 ||||| ||| || || || |||||||| | ||| || ||| | |||| ||||| Sbjct 410900 GTCCAGAAACTTGCTTCACTCTTCTTATACATTTCCCAGATTTCAGGGTATTTAATAGGC 410959 Query 19534 AATATAACAAATCTATTTTTATTTTCT-TTAA 19564 || | |||||| | | || |||||| |||| Sbjct 410960 AAAAGAACAAAGCGGTCCTTGTTTTCTCTTAA 410991 Score = 215 bits (238), Expect = 6e-51 Identities = 627/953 (66%), Gaps = 24/953 (3%) Strand=Plus/Plus Query 47886 GATGCTAGATTACATACAGCTACCTCAT--TTGGATTAGTATATTGTATTATTTCAGCAC 47943 || || || ||||||||||| ||||| | ||||| |||||| | ||| ||||| | || Sbjct 408586 GAGGCCAGGTTACATACAGCAACCTCGTCTTTGGA--AGTATACTCTATAATTTCTGTAC 408643 Query 47944 ATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT--ATTNNNNTTGTTACATGC 48001 | || || || |||||| || || |||||||| || || ||| |||| ||| Sbjct 408644 AAAGGTTGGAACTTTTGATGGTTCCTAAATTTTGCTGGTTGGATTTGC--TGTTTGCTGC 408701 Query 48002 GTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCA 48061 || || || | || | |||| ||||| ||||| ||||| || || | || | ||| Sbjct 408702 ATCTTTATACAACAGATAAGGGGTTCCGGTTTCAATCTGTGAATCCAGAATGGCAAACCA 408761 Query 48062 AACAGTCCTAGCCTTTATAACAGCTCTA---GCTTTATTATCATGTTCGTATTTAGTATA 48118 || || | ||||| | | | || || || | |||||| ||| Sbjct 408762 AAGC-TCTTGTGCTTTA--ATGGTTTTACGGGCACGTCCTTCTTTTTCGTAACGCTCATA 408818 Query 48119 TAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACACAT 48178 ||| || ||||| | ||| | || | | || || ||||| |||||| | Sbjct 408819 TAAAGCATCGAATTCTGCACCAAAGCAATCTGCCAGTCCCGGGGCTTCATGAGGACAGAA 408878 Query 48179 CAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGC 48238 || ||| || | | | || ||| || |||| || | || || |||||| || Sbjct 408879 TAAACTCCAGTCTCCGTTTTCTTCTACCCTTCTCATGAACAGGTCACATACCCAAAGGGC 408938 Query 48239 TATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTA---AGTTCAA 48294 ||| |||||||| || | | |||||||| || ||| || |||| || || | Sbjct 408939 -ATAGAATAAATCTCTGGCACGAAGTTCTTCTTTACCATGGTT---TTTACGCAGGTCCA 408994 Query 48295 GAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTT 48354 |||| || | ||| ||||||||||| || | || || || | ||||| |||| Sbjct 408995 GAAAACTCAGCACATCTGCATGCCATGGCTCCAGGTAAATGGCAAAAGCACCTTTACGTT 409054 Query 48355 TATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAA 48414 || || || || || | ||| | ||| |||| |||| | ||| | ||||| || |||| Sbjct 409055 TACCTCCACCCTGGTCCACATAACGGGCGGTATCGTTAAATACTTTCAACATAGGTACAA 409114 Query 48415 TACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAA 48474 | ||||| | || || ||||| ||||||| ||| | || | || ||| | Sbjct 409115 TCCCATTGCTGGTCCCGTTTGTTCCACCAATATAAGATCCCGTGGCACGGATGTTATGGA 409174 Query 48475 TTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCAT 48534 | | ||| ||||||||||| ||| || ||| ||| |||| | ||||| | Sbjct 409175 TGCTTAAACCAATACCACCTGCGCTTTGTGAAATTTTAGCGGTTTGTTTTAAAGTATCGT 409234 Query 48535 AAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGAT 48594 |||||||||| ||||| || || ||| | | || ||| || ||||||||| || | Sbjct 409235 AAATTCCTTCAATACTGTCGTCCTGCATGGTCAGTAAAAAGCAGGAAGACATTTGAGGTT 409294 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 | || ||| ||||||||| ||||| | |||||| ||||||| ||| | || Sbjct 409295 TAGGGGTAGCTGCATTAAATAAAGTTGGGGTTGCATGCGTAAACCAGCGCTCACTCATCA 409354 Query 48655 ATTTATATGTTTCAATAACAGAATCTATATCCCATTGATGTATACCTATAGATACACGCA 48714 ||||| ||| |||| || || ||||| || || || |||| | ||||||| Sbjct 409355 GGTTATACGTTGCAATCGCACTTTCAATATCTTCTTTGTGAATCCCTACGGCAACACGCA 409414 Query 48715 TTAACATATATTGAGGTCTTTCAACAATTTTGTTATT-TATTTTCAAAAGATATGATTTT 48773 | |||| || ||| || | ||| |||| ||||| || |||||||| ||||| |||||| Sbjct 409415 TAAACAAATGTTGCGGGCGTTCTACAA-TTTGTCCTTCTATTTTCAGCAGATAGGATTTT 409473 Query 48774 TCCAATGTTTTAAAACCAAAATAGTTGTATGAAAAGTCGTTATCATTAATAAT 48826 || | |||||||| |||||||| | | || ||| || | |||| |||||| Sbjct 409474 TCAAGGGTTTTAAACCCAAAATAATCGAATCCAAAATCCCTGTCATAAATAAT 409526 >seq531 Length=89189 Score = 181 bits (200), Expect = 1e-40 Identities = 396/587 (67%), Gaps = 17/587 (3%) Strand=Plus/Plus Query 18675 ATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCAT 18734 ||| ||||| || | | ||| || || || ||| ||| | ||| || || |||||| Sbjct 87583 ATAGTCGGCCACACGATGTTCGAAAAAGTTTGTTATTCTTTGTAAAGAAATCATTTCCAT 87642 Query 18735 AAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCT 18794 | |||||||| || || || |||| || ||| | || | | | ||||||| Sbjct 87643 CCAGTCAAATGGGTTGTTGGTGTTGTATAGCTTGTTGTAGCCAAGGGCAACGAGTAGTCG 87702 Query 18795 ATCCGCTACA-AATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAA 18853 ||| || ||| |||| ||| || ||| ||| ||||||||||||||| | | Sbjct 87703 ATCGGC-ACAGAATTCAATGTACAGAGACATTTGTCCACTATTCATTCCTATTAAGTCCA 87761 Query 18854 CAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATA 18913 | || | | ||||| | ||| |||| ||| | ||| || ||| || || || Sbjct 87762 CTGGCAAAGACTCTGTTACAAACTCTTTTTCACAGTCTACCGCATCTCGAATGATGGA-- 87819 Query 18914 CAACTCTATCTTCATTAGGAGG-----GTATAGAAGATGTTTAAACATCAAACATGCAAA 18968 |||||| || | || | || ||| | | || | | | ||| ||||| Sbjct 87820 ---CTCTATTGTCGATGGGTCGAGTTTGTTTAGTAACTTGCTATAGAGTAGACAGGCAAA 87876 Query 18969 ATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCAT 19028 |||||||||| || || || | ||| || | || || || | | ||||||||| Sbjct 87877 GTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGCCAGACCAGGCAT 87936 Query 19029 CAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTC 19088 || || | ||| || | ||||||||| ||| || |||||| || || |||||||| Sbjct 87937 CAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAAAAAGATACCTTC 87996 Query 19089 TACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATT 19147 ||||||||||| || || ||||| ||| || ||| | ||| || || ||||| Sbjct 87997 GACTGCTGCAAATGCCACCAGTCTCTCTGCA-AACGATGCAGAGTTGTT---TATCCAAC 88052 Query 19148 TCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGAT 19207 || |||||||||||||||||||| |||||||| ||||||||||||| ||| |||| | Sbjct 88053 GAAGAGCCCAATCAGCCTTCTTTTTGACACATGGAATTGTCTCTATAGCATTGAATAACT 88112 Query 19208 ACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | ||| ||||||||||| ||||| ||||||||||| |||| Sbjct 88113 TGGTCTTTTCAAATGTATCTTTAATATATGTATCTATCAATAGACTG 88159 Score = 84.2 bits (92), Expect = 2e-11 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 19261 TCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATC 19320 ||||||||||| ||||| || || || ||||| | ||| || ||| || |||| ||| Sbjct 88229 TCTGAATGAATGTTTTCAATGGCAATTTGAAAGCTGTAGAAGGATCGAGCCTCTGGTATT 88288 Query 19321 TGTACTTCA-CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGC 19379 || |||||| | | || | | | | ||||||||| || || |||||| || || Sbjct 88289 TGGACTTCAGCCATGAAGCGAGTTG-CTAGATTTTCATTTACAATGCCATCAGAGGCAGC 88347 Query 19380 AAAAAATGCTAATACATGTTTAATAAAATGTTTTTCAT 19417 ||| ||||| | |||||||| ||||| ||| |||||| Sbjct 88348 AAAGAATGCAAGCACATGTTTTATAAAGTGTCTTTCAT 88385 >seq689 Length=46727 Score = 122 bits (134), Expect = 1e-22 Identities = 209/300 (70%), Gaps = 9/300 (3%) Strand=Plus/Minus Query 18957 CAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGT 19016 || ||| ||||| || || || | || ||||| | || ||||| || || ||||| || Sbjct 18319 CAGACAGGCAAAGTCGCAGTGCAAACCTTCGTCACGGCTGATCAACTCGTTGGAAAAGGT 18260 Query 19017 TAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAA 19076 ||||| ||||||| ||| | || || | ||| || || ||| || ||||| || Sbjct 18259 CAAACCTGGCATCAATCCACGCTTCTTGAGCCAAAAGATTGAACAGAAACTACCAGAGAA 18200 Query 19077 GAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATA--ACTAGCATCATTA 19134 || ||||| || || |||||||| || || | | || || | ||| | | | Sbjct 18199 AAAGATACCCTCGACGGCTGCAAACGCCACCAAACGCTCGGCAAACGACTTGGA-----A 18145 Query 19135 TTATGA-ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTAT 19193 || ||| |||||| ||| |||||| ||||||||||| || |||||||| || |||||||| Sbjct 18144 TT-TGAGATCCATCTCAATGCCCAGTCAGCCTTCTTCTTGACACATGGAATAGTCTCTAT 18086 Query 19194 AGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACT 19253 | ||| || | || ||| ||| || |||| ||||| ||| || |||||||| Sbjct 18085 GGCATTGAACAAATTGGCCTTTTCAACTGGATTCTTAATATATGTATCGATTAATAAACT 18026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562010395828200