Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016158.1 Length=49576 Score E Sequences producing significant alignments: (Bits) Value seq11754 275 2e-69 seq816 201 4e-47 seq11777 170 6e-38 seq13878 123 8e-24 seq400 113 1e-20 seq179 95.1 4e-15 >seq11754 Length=510 Score = 275 bits (304), Expect = 2e-69 Identities = 224/272 (82%), Gaps = 0/272 (0%) Strand=Plus/Minus Query 47625 GGCTGGATCATGGTTGTGATGGGGTTCACCGGGAAAGCTGCTGCGGCTATCAAAGAAAGC 47684 || || || ||| | |||||||| ||||| || ||| | ||||| || | || || | Sbjct 497 GGATGCATGATGCTAGTGATGGGATTCACTGGCAAAACAGCTGCCGCAGTGAAGGAGTGT 438 Query 47685 TACATTTCAGCTTTCAATTGGATGTCTGAGCAACTTAGCCGTCGCCTGGCCATGGGTGAA 47744 ||||| || ||||| |||||| | ||||| || | ||| ||| |||| ||||||||| Sbjct 437 TACATCAATGCCTTCAACTGGATGGCCGAGCAGCTAAACCGGCGCATGGCGATGGGTGAA 378 Query 47745 GAAATGCAGCACCGCTACGCCATCAAAGAAACGCGCTCAAAGTTGAAGGGCACGATCGGC 47804 ||| ||||||| |||||||||||||||||||||||||||||| |||| ||||||||||| Sbjct 377 GAATTGCAGCATCGCTACGCCATCAAAGAAACGCGCTCAAAGCTGAAAGGCACGATCGGA 318 Query 47805 AGCCGGTTGATGAACGAGCGGAAGAAAGAGAAACGTGTTCTGGCTGTGGAGCATGAGCAC 47864 ||||| |||||||||||||||||||||||||| || || |||| | || ||||||||| Sbjct 317 AGCCGTTTGATGAACGAGCGGAAGAAAGAGAAGCGCGTCCTGGAGCTCGAACATGAGCAC 258 Query 47865 ATCATGCAGGTAACGCAGCCTGAATTGCTGAT 47896 |||||||||||||||||||| |||||| |||| Sbjct 257 ATCATGCAGGTAACGCAGCCAGAATTGTTGAT 226 >seq816 Length=14434 Score = 201 bits (222), Expect = 4e-47 Identities = 262/362 (72%), Gaps = 3/362 (1%) Strand=Plus/Minus Query 39215 AACACCGACTGGGCTTATGGGGTGATTCGATGAAATCTCTTGCAGAGCAGATGCGTAACC 39274 ||||| |||||| ||| |||||| | |||||| | || | |||||| |||| Sbjct 3267 AACACTGACTGGATTTACGGGGTGGATTTATGAAAAACATCGCCGCACAGATGGTTAACT 3208 Query 39275 ACGACCGCGAGCAGATGAGCCGCATGGCCCATAACCTGCCAGAGCAGTACCAGGAGCGTG 39334 ||||| ||||||||| | || || ||| | ||| |||| || |||||| | || Sbjct 3207 TTGACCGTGAGCAGATGCGTCGGATCGCCAACAACATGCCGGAACAGTACGACGAAAAGC 3148 Query 39335 CGCCGGTCGAACAAGTGGCGCAGGTATTCAACAAGCTGTTCAACGAGCTGCGCGCCGCTT 39394 ||| ||| |||| || |||||| | ||||| |||||| | || | | || ||| Sbjct 3147 CGCAGGTACAACAGGTAGCGCAGATCATCAACGGTGTGTTCAGCCAGTTACTGGCAACTT 3088 Query 39395 TCCCGGCCAGTATGGCAAACTTCCGCACCCAGGATGACCTGAACGAATTCCGCCGTCAGT 39454 ||||||| || |||| ||| || |||| |||| ||||||||| ||||||| |||| Sbjct 3087 TCCCGGCGAGCCTGGCTAAC---CGTGACCAGAATGAACTGAACGAAATCCGCCGCCAGT 3031 Query 39455 GGCTGCTGGCGTTTCAGGAGAACGGGATCCACACCATGGCTCAGGTCGATGCCGGCATGC 39514 || | ||||| || | ||| ||||||||| ||| |||| ||||| | || || |||| Sbjct 3030 GGGTTCTGGCTTTCCGGGAAAACGGGATCACCACAATGGAACAGGTTAACGCAGGAATGC 2971 Query 39515 GTGTAGCTCGCCGCCAGGAGCGTCCATTCCTGCCGTCTCCGGGCCAGTTCGTCGCCTGGT 39574 | ||||| || || ||| | || ||||||||||| || || || ||||| |||||||||| Sbjct 2970 GCGTAGCCCGTCGGCAGAATCGACCATTCCTGCCATCACCCGGGCAGTTTGTCGCCTGGT 2911 Query 39575 GC 39576 || Sbjct 2910 GC 2909 Score = 147 bits (162), Expect = 7e-31 Identities = 148/188 (79%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 42240 TTTGATTTTCTGGAATCAAACCGCCATAATCATGTCATCGGAGCCTGAACAACTCCGGTG 42299 |||||||||| |||||| | |||||| | |||| ||||| ||||| |||||||| Sbjct 426 TTTGATTTTCAATAATCAACTTGTCATAATTAAGTCACCGGAGTTTGAACTCCTCCGGTG 367 Query 42300 ACTTCTGCGCATTTAAGGGGACTTAAATGCGACCA--CAATCTGAACTCC--TCACCTTG 42355 |||||||||| | | |||||| | ||||| || ||||| ||||| || || | Sbjct 366 ACTTCTGCGC-TAAACGGGGACGTTTATGCGCACATACAATCCAAACTCTCTTCTCCCT- 309 Query 42356 TCACAGATGCAGAAATGCACCTGCGATTTTCTGCATTCTGCGTTTGACCTCTTCGGAGGT 42415 ||||||||||||||||||||||||||| | ||||| | |||||||| |||| ||||||| Sbjct 308 TCACAGATGCAGAAATGCACCTGCGATATCTTGCATCCAGCGTTTGATCTCTGCGGAGGT 249 Query 42416 GAAGCGTG 42423 |||||||| Sbjct 248 GAAGCGTG 241 >seq11777 Length=413 Score = 170 bits (188), Expect = 6e-38 Identities = 105/112 (94%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 10024 TTTTATGCGCATCGCACGCGCACATCGAAGAAAGTCTTTCAGCTGTGAGCCTGGGCAAAC 10083 || || |||||||||||||||||| || |||||||||||||| ||||||||||||||||| Sbjct 113 TTCTACGCGCATCGCACGCGCACACCGTAGAAAGTCTTTCAGTTGTGAGCCTGGGCAAAC 54 Query 10084 CGTTAACTTTCGGCGGATTTGCCGTGCGACAGGCTCACGTCTAAAAGGAAAT 10135 |||||||||||||||| ||||| ||||||||||||||||||||||||||||| Sbjct 53 CGTTAACTTTCGGCGGCTTTGCTGTGCGACAGGCTCACGTCTAAAAGGAAAT 2 >seq13878 Length=319 Score = 123 bits (136), Expect = 8e-24 Identities = 70/71 (99%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 32466 GACGTCAGCTGCCATTCGTTATCGTTGAGCTTTTTGGCGGTGTACTGCTTGCCGTTGTGG 32525 |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 319 GACGTCAGCTGCCACTCGTTATCGTTGAGCTTTTTGGCGGTGTACTGCTTGCCGTTGTGG 260 Query 32526 GTGACTGTCAT 32536 ||||||||||| Sbjct 259 GTGACTGTCAT 249 >seq400 Length=38681 Score = 113 bits (124), Expect = 1e-20 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 46196 AAAAGAACCTGGGCAACCAGGTTGCTGGTGATGGCTGGAAATATCGCGGTCGCGGCCTGA 46255 ||||||| |||| ||| | | | | ||| |||||| || | ||| ||||| || | Sbjct 32793 AAAAGAA--TGGGGAACAACGGTCCGACTGACGGCTGGTTTTACCTCGGGCGCGGGCTTA 32850 Query 46256 AGCAAATCACCGGGCTCAGCAATTACCGCAACTGTGGCCACGCGCTGAAGTTGGACCTTG 46315 || ||||||||||| | ||| || ||| |||| ||| | | |||||| |||| || | Sbjct 32851 TCCAGATCACCGGGCTGAACAACTATCGCGACTGCGGCAATGGCCTGAAGGTGGATCTGG 32910 Query 46316 TAACCCAGCCTGAATTGCTGGAACAGGATGAATATGCTGCGCGCTCCGCTGCATGGTTCT 46375 | | |||||||| |||||| ||||| ||||| || || ||| ||| || ||||||| Sbjct 32911 TTAAGCAGCCTGAGCTGCTGGCGCAGGACGAATACGCGGCCCGCAGCGCGGCGTGGTTCT 32970 Query 46376 ATGTCTCGCACGGATGCCTGCTCCATTCCGGCGACGTGGAGCGCGTGACGCTGCTTATCA 46435 | | | || ||| || | |||||||| ||| |||||| |||| | | |||| Sbjct 32971 TCGCAACCAAAGGCTGCATGAAGTACACCGGCGACCTGGTGCGCGTCACGCAGATCATCA 33030 Query 46436 ACGGCGGCCGTAACGG 46451 | || || | ||||| Sbjct 33031 ATGGTGGGCAGAACGG 33046 Score = 91.5 bits (100), Expect = 5e-14 Identities = 119/163 (73%), Gaps = 4/163 (2%) Strand=Plus/Plus Query 45898 GCGGCAGGTATAAGCGCCGGTCTAGCCGTGCGCTGGTTTCACTATATCGATGCTGCAATG 45957 || || ||||| || | | || ||| |||||||| || ||||| || |||||| Sbjct 32496 GCCGCCGGTATCAGTGAGGTGCTGGCCACGCGCTGGTATCTGCATATCACCGCGGCAATG 32555 Query 45958 AAGGAATTCGGCAT--AACCGCGCCGCTCGATCAGGCCATGTTTATCGCGCAGATGGGCC 46015 || || || ||||| ||| | |||| | ||||| ||||||||||||||| | || | Sbjct 32556 AAAGAGTTTGGCATCGAACAAC--CGCTGCACCAGGCGATGTTTATCGCGCAGGTCGGGC 32613 Query 46016 ACGAGTCCGGCGGCTTCACCCGGCTGGTGGAAAACCTGAACTA 46058 | ||||| |||||| ||||||||| ||||||| | ||||| Sbjct 32614 ATGAGTCTACCGGCTTTACCCGGCTGCAGGAAAACTTCAACTA 32656 >seq179 Length=18974 Score = 95.1 bits (104), Expect = 4e-15 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 12181 GCTGGAATCTCCGTTGGTCAGTACAGCGCAGCAATGCGTACGCTTCCGGCTCAGTTCACG 12240 || || || ||||| || ||||| | || || ||||||| ||| || || |||||||| Sbjct 10045 GCGGGGATTTCCGTCGGGCAGTATAAAGCCGCCATGCGTATGCTGCCTGCACAGTTCACC 10104 Query 12241 GATATCGCCACGCAGTTAGCTGGTGGGCAGTCGCCGTTCCTGATTCTGCTGCAACAGGGC 12300 || | ||||||||| | || || ||||| |||| ||||| |||||||||||||| Sbjct 10105 GACGTGGCCACGCAGCTTGCAGGCGGGCAAAGTCCGTGGCTGATCCTGCTGCAACAGGGT 10164 Query 12301 GGGCAGATTAAAGAC 12315 || ||| |||| ||| Sbjct 10165 GGTCAGGTTAAGGAC 10179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 158495236371780