Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq24 194 4e-45 seq215 156 1e-33 seq2164 89.7 1e-13 seq1 89.7 1e-13 >seq24 Length=857 Score = 194 bits (214), Expect = 4e-45 Identities = 206/271 (76%), Gaps = 23/271 (8%) Strand=Plus/Plus Query 34898 ATGAGCAGAGTCACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 34957 |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 471 ATGAACAGAGTAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCA 530 Query 34958 TGGGCGGTTAATCATTACCGTGATAACGCCATCTCCTACAAAGAGCAGCGCGATAAA--- 35014 ||||| |||||||||||||||||||||||||| ||||||||| |||||||| ||| Sbjct 531 TGGGCTGTTAATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAAT 590 Query 35015 GCCACA----TCCATC--------------ATCGCTGATATGCAGAAGCGTCAACGTGAT 35056 |||| | | | | || |||| ||||||| ||| || |||||| Sbjct 591 GCCAGAGAACTGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGAT 650 Query 35057 GTAGCAGAACTCGACGCCAGATACACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGA 35115 || || | ||| || | | |||||| |||||| | ||| |||| || || || || || Sbjct 651 GTTGCTGCACTGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GA 709 Query 35116 AAGTCTCCGTGCTGATGTTTCTGCTGGTCGT 35146 ||| |||| || |||| | ||||||||| Sbjct 710 TGCTCTGCGTGATGGTGTTGCCGCTGGTCGT 740 >seq215 Length=48791 Score = 156 bits (172), Expect = 1e-33 Identities = 343/505 (68%), Gaps = 12/505 (2%) Strand=Plus/Plus Query 12683 CGATCCGTCGCTGGATGAATGCAATGGCACGCTGACGGCCTGCAAACTCCGATTCGGCGA 12742 ||| ||| | ||||| | ||||| ||| ||| | ||||||| | || |||||||| Sbjct 27480 CGACCCGGCCCTGGACCAGTGCAAGGGCTGCCTGTCTTCCTGCAAGTTACGCTTCGGCGA 27539 Query 12743 AAATAACGAACTCTCGTTTGGTGGCTTCCCTGGTACGTCGCTGAT---CAGGAGTTGA-T 12798 | ||||||||||| || || || ||||| | ||| ||||| | |||| ||| Sbjct 27540 GTACAACGAACTCTCCTTCGGCGGATTCCCCGCCGTGTCCCTGATAGCCCGGAGCTGACC 27599 Query 12799 ATGCGTCAGAAAACCATCGATGCGATTATGGCGCATGCTGCAGCTGAATATCCTCGTGAG 12858 ||||| || | | ||| | ||||| ||||||||| ||||| || ||||| ||| Sbjct 27600 ATGCGCAAGCACATCATTGCGGCGATCCAGGCGCATGCGGCAGCGGAGTATCCGAAAGAG 27659 Query 12859 TGTTGCGGCGTGGTG-GCGCAAAAGAGCCGGGTAGAGAAATATTTTCCATGTAGTAACCT 12917 || ||||| || || || || | |||| |||| || || || || | ||| | Sbjct 27660 TGCTGCGGGCTGCTGCTGGCTGTAG-GGCGGGCGCAGAAGTACTTCCCGTGCCGGAACAT 27718 Query 12918 CGCTACCGAGCCGACAGAACATTTTCACCTGTCGCCAGAAGACTATGCAGCTGCTGAGGA 12977 ||| || ||||||| ||| | |||| || || || ||||| || || || ||||| Sbjct 27719 CGCCACGGAGCCGAACGAAGAGTTTCGACTTGATCCTGAGGACTACGCTGCAGCGGAGGA 27778 Query 12978 CTGGGGTACGGTGATCGCCATCGTTCACAGTCACCCTGACGCCACAACGCAGCCG--AGC 13035 | ||| ||||||| || |||||| ||||| |||||||| | | |||| | | Sbjct 27779 CCTGGGCGAAGTGATCGGTATTGTTCACTCGCACCCGGACGCCACCAGCCGGCCGTCACC 27838 Query 13036 GAACTGGATAAAGCGCAATGCGACGCAACGCTTTTACCCTGGCATATTGTGAGCTGGCCG 13095 | || || || ||||| || || || |||||||| ||| || ||||| Sbjct 27839 GCAC--GACCTGGCCATGTGCGAGGCCACCGCCTTGCCCTGGCACATTCTGTCGTGGCCC 27896 Query 13096 GATGGGGATTTACGCACCATCCAGCC-GCGCGGAGAACTGCCACTGCTGGAGCGTCCGTT 13154 || |||||||| || || ||| ||| || | || || ||||||||| |||| ||||| Sbjct 27897 GAGGGGGATTTGCGGACGATCACGCCAACGGGCAGCAC-GCCACTGCTCAAGCGGCCGTT 27955 Query 13155 TGTGCTTGGACACTTCGACTGCTGG 13179 ||| | ||| || ||||||||| Sbjct 27956 TGTACATGGCGCCTGGGACTGCTGG 27980 Score = 98.7 bits (108), Expect = 2e-16 Identities = 197/292 (67%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 15788 GCGGTACGGCTTCAATCAGCTGGAAATGACAGCCATCGGCTGCACCAGGCAGTCAGAGGC 15847 ||| |||||| || | |||||| || | || ||||||||||| | |||| ||||| Sbjct 32318 GCGCTACGGCGATAACCCGCTGGAGATCAGCGCGATCGGCTGCACGCGTGAGTCTGAGGC 32377 Query 15848 GAACCGAAAGGGGCGCTGGGGTATTCTCACCAATAACAAGGATCGCGTTGTTTCGTTTGA 15907 | | || || |||| | |||||||| |||||| || | || ||||| Sbjct 32378 GCAGCGCCGCGGCAAGTGGGCGTTGCTCACCAACTCCAAGGACCGGGCGGTAACGTTTCG 32437 Query 15908 TGTCGGGCTGGACGGAAACATTCCGCAGCCTGGCTACATCATCGCCGTGGCAGACGAGCT 15967 |||||| ||||||||| || || | |||||||||| || | | | || ||||| || Sbjct 32438 TGTCGGCCTGGACGGACGTATCCCTCTGCCTGGCTACGTCGTTCCGATCGCTGACGAACT 32497 Query 15968 GCTTTCCGGAAAGGTTATGGGCGGCCGCATCAGCGCCGTTAACGGTCGCGTTATCAAACT 16027 ||| |||| | |||| || |||||| ||||| ||||| || |||| || Sbjct 32498 GCTGGCCGGTCGGCCCGTGGGTGGGCGCATCTCAGCCGTAAACGGCAAAGTCATCACCCT 32557 Query 16028 TGACCGCGTAGCTGATGCAGCACCAGGTGATCGCCTTATTCTCAACCTTCCC 16079 ||||||| | | || ||| ||||| || || || |||||||| ||| Sbjct 32558 GGACCGCGACACCCAGGCCAAACCCGGTGACCGGCTGATCCTCAACCTGCCC 32609 >seq2164 Length=1578 Score = 89.7 bits (98), Expect = 1e-13 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 21020 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTAAA 21071 ||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 >seq1 Length=7745 Score = 89.7 bits (98), Expect = 1e-13 Identities = 73/86 (85%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 21049 TCCTATTATCGGCACCATTTAAATCAATAAGTTACCTAGCATTTAAGTAAACTACGTTCT 21108 ||||||||||| ||||||| ||||||| ||||||| |||||| || || ||||| | Sbjct 205 TCCTATTATCG-CACCATTAAAATCAAAGAGTTACCCCATATTTAAATACACCACGTT-T 148 Query 21109 CCTCTTGTGCCGTATTTGTGCCATTG 21134 |||| ||||||||||||||||||||| Sbjct 147 CCTCCTGTGCCGTATTTGTGCCATTG 122 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117174109605630