Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016655.1 Length=51342 Score E Sequences producing significant alignments: (Bits) Value seq7603 168 2e-37 seq8161 100 9e-17 seq6140 96.9 1e-15 seq9102 91.5 5e-14 seq1940 91.5 5e-14 >seq7603 Length=749 Score = 168 bits (186), Expect = 2e-37 Identities = 153/193 (79%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||| ||||| ||||||||| |||||||||||||| ||| | ||||||||||| |||| Sbjct 520 ACGGCAAGCTCTCCTGCCAGCTGTACCAGCGCAGCGCCGACATGTTCCTCGGCGTTCCGT 579 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTCGGACTGAAGG 24939 |||| ||||| |||||||||||||| ||||| | | || | ||| |||||| | | Sbjct 580 TCAACATCGCCAGCTACGCGCTGCTCACCCACATGATGGCCCAGCAGGCCGGACTCGACG 639 Query 24940 TCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGCAGG 24999 ||||||| ||| ||||||||||||||||| |||| | || || |||||||| |||| Sbjct 640 TCGGCGAGTTCGTCTGGACCGGCGGCGACTGCCACATCTACGACAATCACGTCGACCAGG 699 Query 25000 CGACCGAACAACT 25012 |||||| || || Sbjct 700 TGACCGAGCAGCT 712 >seq8161 Length=1221 Score = 100 bits (110), Expect = 9e-17 Identities = 78/93 (84%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 26275 GCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGCGGC 26334 || || |||||| || ||||||||||| |||||||||||||||||| |||||||| || Sbjct 653 GCTCAGTGCGAGGCGACCGGAAACTGGGCCATCAACACCGGCAACGGTTTCTACGGAGGA 594 Query 26335 CTGCAGTTCACGCAGTCCACCTGGGACGCGTTC 26367 || |||||||| ||| ||||||||| || ||| Sbjct 593 CTTCAGTTCACCCAGAGCACCTGGGAAGCATTC 561 >seq6140 Length=1248 Score = 96.9 bits (106), Expect = 1e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 24820 ACGGAAAGCTGAGCTGCCAGCTCTACCAGCGCAGCGCGGACGTATTCCTCGGCGTGCCGT 24879 |||||||||| ||||||||||||||||||| ||| || | || ||||||||||||| Sbjct 547 ACGGAAAGCTTTCCTGCCAGCTCTACCAGCGCTCCGCCGATATCTTTCTCGGCGTGCCGT 488 Query 24880 TCAATATCGCGAGCTACGCGCTGCTGACCCATTTCTTCGCGGACCAGCTC---GGACTGA 24936 |||||||||| ||| || |||||||||| || | | || ||| || || ||| Sbjct 487 TCAATATCGCATCCTATGCCCTGCTGACCC---TCATGGTGGCGCAGGTCACGGGTCTGC 431 Query 24937 AGGTCGGCGAATTCATCTGGACCGGCGGCGACGTCCACCTGTATTCGAACCACGTCGAGC 24996 || || || ||| | || ||||| | || || ||| | ||||| |||||| Sbjct 430 AGCCGGGTGATTTCGTTCACACGCTGGGCGATGCGCATCTCTATGCCAACCATTTCGAGC 371 Query 24997 AGGCG 25001 ||||| Sbjct 370 AGGCG 366 >seq9102 Length=562 Score = 91.5 bits (100), Expect = 5e-14 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 26273 TCGCCCACTGCGAGTCGTCCGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGCG 26332 |||| || |||||| | |||| |||||| |||||||||||||||||| |||||||||| Sbjct 449 TCGCACAGTGCGAGGCCACCGGTAACTGGGCCATCAACACCGGCAACGGTTTCTACGGCG 508 Query 26333 GCCTGCAGTTCACGCAGTCCACCTGGGA 26360 || |||||||| ||| ||||||||| Sbjct 509 GCGTGCAGTTCGATCAGAACACCTGGGA 536 >seq1940 Length=4280 Score = 91.5 bits (100), Expect = 5e-14 Identities = 178/262 (68%), Gaps = 11/262 (4%) Strand=Plus/Minus Query 26232 CGCAGGCACTCCGGCCGCGTCGGCGCACGACTGGTCCGGAGTCGCCCACTGCGAGTCGTC 26291 ||||||||| | |||| | | ||||||||||| || ||||| | ||||| || || Sbjct 679 CGCAGGCACCGCATCCGCAGCCACCCACGACTGGTCGGGTGTCGCAGAATGCGAATCTTC 620 Query 26292 CGGAAACTGGAGCATCAACACCGGCAACGGGTTCTACGGCGGCCTGCAGTTCACGCAGTC 26351 || |||||| | |||||||| ||||| | ||||||||| || ||||||| ||| Sbjct 619 GGGCAACTGGGCCGCGAACACCGGAAACGGCTACTACGGCGGACTCCAGTTCAGCCAGAG 560 Query 26352 CACCTGGGACGCGTTCAAGCCTGAAGGCGCAGCCTGGCGCGCTGATCTGGCCACGATGGC 26411 ||| ||||| || | | |||| ||| | |||| | |||| ||| Sbjct 559 CACGTGGGAGGCCT---------ACGGCGGAGCGGGCAGCGCCGCCAACGCCAGCCAGGC 509 Query 26412 GGATCAGAT-CGCGGCAGCGGAAGCAACCCTGAAGGTGCAGGGCATCGGCGCGTGGCCGG 26470 || ||| | |||| | || | || || ||| |||||| |||||||||||||| Sbjct 508 AGAACAGGTCCGCGTTGCTGAAAACGTCCTTGCCGGT-CAGGGCGCCGGCGCGTGGCCGG 450 Query 26471 TGTGTGGGGCGTACCTCGGCTG 26492 |||| || ||||||| |||| Sbjct 449 TGTGCGGACAGTACCTCCGCTG 428 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 164145496524240