Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016762.1 Length=49135 Score E Sequences producing significant alignments: (Bits) Value seq29 174 5e-39 seq685 168 2e-37 seq909 150 6e-32 seq329 113 1e-20 seq74 104 7e-18 seq1910 100 9e-17 seq6650 91.5 5e-14 seq1130 87.8 6e-13 seq28 84.2 7e-12 >seq29 Length=371730 Score = 174 bits (192), Expect = 5e-39 Identities = 202/271 (75%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||||||||||||||||| || || |||||||| |||||||| || || Sbjct 206228 CCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGCCC 206287 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | || ||| |||| || ||||| |||||||||||||| || || ||||||||||| Sbjct 206288 GATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATGTT 206347 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 ||| ||||| |||||||| || |||||||| ||| || | ||| | ||||| | || Sbjct 206348 CGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATCAT 206407 Query 21493 CATCGCGAAGCACCGCAACGGCGAGCCAA---GCACTGTTCGGTGCGCGTTCCTGGGTAA 21549 |||| || || || ||||| ||||| |||| || || ||| | ||||| Sbjct 206408 TATCGGTAAACAGCGTAACGG---GCCAATCGGCACCACGCGCCTGGCCTTCATCGGTAA 206464 Query 21550 GTACTCGCGATTCGAGCAGCTCGCTCCGGGC 21580 ||| | || |||||| | || || |||||| Sbjct 206465 ATACACCCGCTTCGAGAACCTGGCGCCGGGC 206495 >seq685 Length=77197 Score = 168 bits (186), Expect = 2e-37 Identities = 263/370 (71%), Gaps = 7/370 (2%) Strand=Plus/Minus Query 21207 TGGTGGACTACCTGCAGCTGCTGGAGAGCTCCGG---CAAGTCCACTCGCACCGAGGACG 21263 |||| || |||||||||||| || || | || | || | ||||| |||| | Sbjct 14444 TGGTTGATTACCTGCAGCTGATGCGCTGCCCAGGCTACGAGGGGAACCGCACTCAGGAGG 14385 Query 21264 TCAGCGACATGTCCC-GCCAGTGCAAGCTGCTGGCGATGGAGCTTGGTATCCCCGTGATC 21322 || || || |||| | || || ||| | |||| | ||| | | |||||| ||| Sbjct 14384 TCGCGGAGATCTCCCGGGCATTG-AAGGGGTTGGCCAAAGAGTTCAATTGCCCCGTCATC 14326 Query 21323 GTGCTGTCGCAGCTCAACCGCTCCCTG-GAGCAGCGGCCGAACAAGCGACCGATGATGTC 21381 | ||| |||||| | |||| | || ||||||||||| |||||||| || ||| | Sbjct 14325 GCGCTATCGCAGTTGTCCCGC-CAGTGTGAGCAGCGGCCCAACAAGCGCCCTGTGAACGC 14267 Query 21382 GGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTACCG 21441 ||| |||| |||||||| ||||||||||||||||| || | ||||||||||| || || Sbjct 14266 AGACTTGCGGGAGTCCGGCGCGATCGAGCAGGACGCGGACATCATCATGTTCGTCTATCG 14207 Query 21442 CGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGATCATCGCGAA 21501 |||||||||||| ||||||| || ||||| || || || ||||||||| ||| || Sbjct 14206 AGACGAGGTCTACAACCCGGACACTGAGTACAAGGGGGTTGCCGAGTTGATCCTCGGCAA 14147 Query 21502 GCACCGCAACGGCGAGCCAAGCACTGTTCGGTGCGCGTTCCTGGGTAAGTACTCGCGATT 21561 |||||| ||||| || | | || || ||| |||||| | || ||| | | || || Sbjct 14146 GCACCGGAACGGTGAAACCGGTACCGTGCGGACCGCGTTTATTGGCAAGGAAACTCGTTT 14087 Query 21562 CGAGCAGCTC 21571 | || |||| Sbjct 14086 TGTGCCGCTC 14077 >seq909 Length=21192 Score = 150 bits (166), Expect = 6e-32 Identities = 156/202 (77%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||||||||||| |||||| ||||| |||||||| ||||| || || ||||| || || || Sbjct 7771 CCCCGTGATCGCGCTGTCCCAGCTGAACCGCTCGCTGGAACAACGCCCGAATAAACGTCC 7830 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||||||| ||| ||||||| || || || ||||||||||| ||||| |||||| |||| Sbjct 7831 CGTGATGTCCGACTTGCGCGAATCGGGCGCTATCGAGCAGGATGCCGACGTGATCCTGTT 7890 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGA-TACCCAGTACCGCGGCGTGGCTGAGTTGA 21491 | | |||||||||||||| || |||| || | |||| || || ||| || | | Sbjct 7891 CATTTACCGCGACGAGGTGTATAACCCCGACTCGCCAG-ACAAGGGAACGGCCGAAATCA 7949 Query 21492 TCATCGCGAAGCACCGCAACGG 21513 |||||| || || || ||||| Sbjct 7950 TCATCGGTAAACAACGTAACGG 7971 >seq329 Length=155757 Score = 113 bits (124), Expect = 1e-20 Identities = 113/147 (77%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| ||| | | ||| || ||||||||||| ||||||| ||||| || ||||| || Sbjct 6497 CCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGACGGCCAAATAAGCGTCC 6438 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 ||| | | |||||||| || ||| ||||| || |||||||| || |||| ||||| Sbjct 6437 GATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGACGCGGACCTGATTATGTT 6378 Query 21433 CGTGTACCGCGACGAGGTCTACCACCC 21459 ||| ||||| |||||||| |||||||| Sbjct 6377 CGTCTACCGGGACGAGGTGTACCACCC 6351 >seq74 Length=23094 Score = 104 bits (114), Expect = 7e-18 Identities = 144/202 (71%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| || ||| || || |||||||| || ||||| | || ||||||||||| || Sbjct 5881 CCCTGTAGTCGCTCTTTCTCAGCTCAATCGTGAACTGGAACGCCGCCCGAACAAGCGCCC 5822 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 || | | || |||| || ||| || ||||| |||||||| || |||||||||| Sbjct 5821 TATCAACGCCGATTTGCGTGATAGCGGCGCCATCGAACAGGACGCGGACCTGATCATGTT 5762 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGATACCCAGTACCGCGGCGTGGCTGAGTTGAT 21492 |||||||||||||||| || |||||||| ||| | || ||| | || || | || Sbjct 5761 CGTGTACCGCGACGAGAAATATCACCCGGAGACCGAACACAAAGGCATTGCAGAAATCAT 5702 Query 21493 CATCGCGAAGCACCGCAACGGC 21514 ||||| ||| || |||||| Sbjct 5701 CATCGGCAAGGCTCGTAACGGC 5680 >seq1910 Length=22743 Score = 100 bits (110), Expect = 9e-17 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 21313 CCCCGTGATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGAACAAGCGACC 21372 ||| || || | ||| || || | || || || || ||| || ||||| || ||||| Sbjct 731 CCCAGTAATTGCGCTATCTCAATTAAATCGGTCGCTTGAGACACGTCCGAATAAACGACC 672 Query 21373 GATGATGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTT 21432 | ||||| || || || |||||||| || || |||||||| ||||| || ||||| || Sbjct 671 AGTCATGTCTGATCTCCGAGAGTCCGGAGCCATTGAGCAGGATGCCGACGTCATCATTTT 612 Query 21433 CGTGTACCGCGACGAGGTCTACCACCCGGA 21462 | | |||||||||||||| || ||||||| Sbjct 611 CCTTTACCGCGACGAGGTGTATAACCCGGA 582 >seq6650 Length=479 Score = 91.5 bits (100), Expect = 5e-14 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Minus Query 21320 ATCGTGCTGTCGCAGCTCAACCGCTCCCTGGAGCAGCGGCCGA-ACAAGCGACCGATGAT 21378 |||| |||||| |||||| ||| |||| ||| || | ||||||| ||| | | Sbjct 347 ATCGCGCTGTCACAGCTCTCCCGTCAGGTGGAA-AGCCGCGAAGACAAGCGCCCGCAGCT 289 Query 21379 GTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGTA 21438 || |||||||| || |||||| ||||||||||||||||||| ||| | || ||||| || Sbjct 288 CTCCGACCTGCGTGAATCCGGGTCGATCGAGCAGGACGCCGACGTGGTGATCTTCGTTTA 229 Query 21439 CCGCGACGA 21447 |||||||| Sbjct 228 TCGCGACGA 220 >seq1130 Length=54118 Score = 87.8 bits (96), Expect = 6e-13 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 21378 TGTCGGACCTGCGCGAGTCCGGGGCGATCGAGCAGGACGCCGATGTGATCATGTTCGTGT 21437 |||| ||||||||||| ||||| || |||||||| ||||||||| | |||| |||||| Sbjct 33896 TGTCCGACCTGCGCGACTCCGGCGCCATCGAGCAAGACGCCGATATCGTCATCTTCGTGC 33955 Query 21438 ACCGCGACGAGGTCTACCACCCGGATACCCA 21468 ||||||||||||| | ||||| | | ||| Sbjct 33956 ACCGCGACGAGGTGGATAACCCGCAAAGCCA 33986 >seq28 Length=112092 Score = 84.2 bits (92), Expect = 7e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 47536 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 47594 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 21115 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 21057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157084271067570