Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016765.1 Length=54024 Score E Sequences producing significant alignments: (Bits) Value seq1130 96.9 1e-15 seq28 84.2 8e-12 seq685 82.4 3e-11 seq29 80.6 9e-11 >seq1130 Length=54118 Score = 96.9 bits (106), Expect = 1e-15 Identities = 74/88 (84%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 45595 CGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATGTTCGTGTACCG 45654 |||||||||||| ||||||||||| |||||||||||||| |||||||| |||||| |||| Sbjct 33900 CGACCTGCGCGACTCCGGCGCCATCGAGCAAGACGCCGATATCGTCATCTTCGTGCACCG 33959 Query 45655 CGATGAAGTCTATTTCCCGAACAGCGAC 45682 ||| || || || |||| | ||| || Sbjct 33960 CGACGAGGTGGATAACCCGCAAAGCCAC 33987 >seq28 Length=112092 Score = 84.2 bits (92), Expect = 8e-12 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 27080 ACAGGATTTAGGTTCCAGCGCCGCAAGGCGTGAGAGTTCGAGTCTCTCCGTCCGCACCA 27138 || ||||||||||||||||||||||||| || ||||||||||||||| | ||||||||| Sbjct 21115 ACTGGATTTAGGTTCCAGCGCCGCAAGGTGTAAGAGTTCGAGTCTCTTCATCCGCACCA 21057 >seq685 Length=77197 Score = 82.4 bits (90), Expect = 3e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 45569 CGCCCCGACAAGCGTCCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGAC 45628 || ||| ||||||| || || | ||| |||| ||||||||||| || ||||| ||| Sbjct 14292 CGGCCCAACAAGCGCCCTGTGAACGCAGACTTGCGGGAGTCCGGCGCGATCGAGCAGGAC 14233 Query 45629 GCCGACATCGTCATGTTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAG 45688 || |||||| |||||||||| || || || || ||||| |||| ||| || ||| Sbjct 14232 GCGGACATCATCATGTTCGTCTATCGAGACGAGGTCTACAACCCGGACACTGAGTACAAG 14173 Query 45689 GGTATCGGCGAAATCCTGATCCGGAAGAACCGGGACGGAGAGATCGGCAGCGT 45741 || | | ||| | | || | ||| ||||| |||| || | ||| | ||| Sbjct 14172 GGGGTTGCCGAGTTGATCCTCGGCAAGCACCGGAACGGTGAAACCGGTACCGT 14120 >seq29 Length=371730 Score = 80.6 bits (88), Expect = 9e-11 Identities = 146/214 (68%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 45524 TGTCCTGTGCTTCCCCTCTGCCAGCTCAACCGAGGTTGCGAGTCTCGCCCCGACAAGCGT 45583 || || ||| || |||| | |||||||||||| | ||| || || |||| || Sbjct 206226 TGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCTCTTGAGCAGCGTCCGAACAAACGC 206285 Query 45584 CCGGTCCTCAGCGACCTGCGCGAGTCCGGCGCCATTGAGCAAGACGCCGACATCGTCATG 45643 ||| || | |||| |||| || ||||| || || ||||| || || ||| | ||||| Sbjct 206286 CCGATCAACTCCGACTTGCGGGAATCCGGAGCGATCGAGCAGGATGCTGACGTGATCATG 206345 Query 45644 TTCGTGTACCGCGATGAAGTCTATTTCCCGAACAGCGACAGGAAGGGTATCGGCGAAATC 45703 ||||| ||||| || || || ||| |||| | | ||| || || |||| |||||| Sbjct 206346 TTCGTATACCGGGACGAGGTGTATCACCCGGAGACCGAGCATAAAGGCATCGCTGAAATC 206405 Query 45704 CTGATCCGGAAGAACCGGGACGGAGAGATCGGCA 45737 | ||| | || | || |||| ||||||| Sbjct 206406 ATTATCGGTAAACAGCGTAACGGGCCAATCGGCA 206439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 172726469190660