Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq98 181 1e-40 seq531 91.5 2e-13 >seq98 Length=772300 Score = 181 bits (200), Expect = 1e-40 Identities = 538/825 (65%), Gaps = 16/825 (2%) Strand=Plus/Plus Query 36883 TTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATAT 36942 |||||||||| || || || ||| | || || ||||| || || |||| || || || Sbjct 410100 TTTTTTGATAATCACCCACACGTTTCTCAAAGAAATTGGTTTTGCCTTGCAGGGAGATCA 410159 Query 36943 TTTCCATAAAATCAAATGGATTAGATGTATTATATATAGTACTACATGATAATTCCTTCA 37002 | |||||||||||||| ||||| | | || |||||| | || | | ||||| || Sbjct 410160 TCTCCATAAAATCAAACGGATTGGTGGCATGATATATTTTGGTATAACCCAGTTCCTGCA 410219 Query 37003 GAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAGTTTATACCAATTA 37062 | || || |||||||| || || || | |||| |||| || || || || | Sbjct 410220 GCCATCTGTCTGCAACAAACTCAATATACTGTGACATCAGTTTTGCATTCATCCCGATCA 410279 Query 37063 GTTTTACTGGAATTGCATCTTGAAGAAATAGTTTTTCTATTATTACAGCATCTT---TAA 37119 | || || | |||||| || |||| ||||| ||| ||| || || ||| Sbjct 410280 GGGCAACCGGCAAGGCATCTGTAATAAATTCCTTTTCGATTTCTACCGCGTCGCGGATAA 410339 Query 37120 CTATATTAACAA-TAACTTCTTCAGTTGGGGGATATTTTAAATATTTAAACAATAAACAT 37178 | || ||| | | || |||||| || ||| | |||| | | | || Sbjct 410340 TTCCATGAACGACTTCCTGGCTCAGTTT----ATTTTTGAGCATTTTATAAAGCAGGCAG 410395 Query 37179 GCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCT 37238 ||||| |||||||| | || |||||||| ||||| |||||| |||||||| ||| Sbjct 410396 GCAAATTCACAATGCATCCCCTCATCTCTGGAAATCAACTCATTACTAAAGGTTAGCCCT 410455 Query 37239 GGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAA-AAGAAAAT 37297 ||||| | ||||||||||| | ||| || || | || ||| ||| | |||||||| Sbjct 410456 GGCATCAGGCCTCTTTTTTTCAACCAGAAGATCGAA-CAGAAGCTCCCGCTGAAGAAAAT 410514 Query 37298 ACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACTATAATCAGAAAT 37357 ||||| ||||| || || || || | |||| | ||| || | | | || Sbjct 410515 GCCTTCCACTGCGGCGAAAGCCACCAAACGTTCGGCAAAATTTCCGCCCTCA------AT 410568 Query 37358 CCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTCAATTGCTTTTAA 37417 ||| || ||| ||||| ||| || ||||| || || || | || | || Sbjct 410569 CCAGCGCAATGCCCATTCTGCTTTTTTCTTTACACAAGGAACCGTCTCTACGGCATGGAA 410628 Query 37418 GAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAAACTATACATTTC 37477 || || |||||||||| |||| | ||||| ||||| || || | ||| |||| Sbjct 410629 CAGCCTGTCTTTTTCTTCAGGATCTTTAATATAGGTATCGATCAGCAGCGCATAGGTTTC 410688 Query 37478 AGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGCTTCAGATAATTG 37537 |||||| || ||||| || ||||| || ||||||||||| | ||||| | | || Sbjct 410689 AGAGTGGATGTTTTCCATCATGATCTGGAAGCCATAAAAACAACGGGCTTCGGGAAGCTG 410748 Query 37538 AACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATCACTAGCTGCAAA 37597 || ||| | | || || || | ||||||||| || || || ||||| || ||||| Sbjct 410749 TACTTCGCTCATGAAGTTCACTGCAAGGTTTTCATTTACAATGCCGTCACTTGCAGCAAA 410808 Query 37598 GAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATAATTTTTTCCAATCATT 37657 |||||||| | || || ||||| | || | | ||| || | ||| | || Sbjct 410809 AAAAGCAAGTATATGAGAAATGAAATGACGCTCGCCTGTATTTAAGTTGTCCCAGTGCTT 410868 Query 37658 AATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTGC 37702 || | || | |||| ||| ||| ||||||| |||||||| Sbjct 410869 CTGGTCATCAGAAAGGTCAATTTCTTCAGCGGTCCAGAAACTTGC 410913 >seq531 Length=89189 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 37172 TAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGAAAAGGT 37231 || ||| ||||| |||||||||||||||||||| | ||| || | || || || || Sbjct 87865 TAGACAGGCAAAGTCACAATGTAAACCTTCATCGCGACTGATATACTCGTTCGAGTGGGC 87924 Query 37232 TAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCCAGAAAA 37291 | || ||||| || || | ||| || | ||| ||||| | ||| |||||| || Sbjct 87925 CAGACCAGGCATCAAGCCACGTTTCTTGAGCCAGAATATCGAACAGAAACTTCCAGAGAA 87984 Query 37292 GAAAATACCTTCAACTGCTGCAAATGCTACAAG 37324 || |||||||| |||||||||||||| || || Sbjct 87985 AAAGATACCTTCGACTGCTGCAAATGCCACCAG 88017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592213107540200