Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq6140 102 7e-17 seq7603 96.9 3e-15 >seq6140 Length=1248 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 29824 TAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGA 29883 |||| || || || ||||| ||||| || || || ||||| | || || ||||| || Sbjct 388 TAGAGATGCGCATCGCCCAGCGTGTGAACGAAATCACCCGGCTGCAGACCCGTGACCTGC 447 Query 29884 GCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATG 29943 |||| |||| || || || | ||| ||||| || || || || ||||| || Sbjct 448 GCCACCATGAGGGTCAGCAGGGCATAGGATGCGATATTGAACGGCACGCCGAGAAAGATA 507 Query 29944 TCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACAC 30003 || | || | |||||||||||| || || |||| ||||||| |||||| ||||| || Sbjct 508 TCGGCGGAGCGCTGGTAGAGCTGGCAGGAAAGCTTTCCGTCGGCCACGTAGAACTGGAAC 567 Query 30004 ATGGTGTGGCACGGAGGAAGAGCCAT 30029 | | |||||| || || || ||||| Sbjct 568 AGGCAGTGGCAGGGCGGCAGCGCCAT 593 >seq7603 Length=749 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 29881 TGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCC 29940 || |||||||||| ||||| || | ||||||||||||||| || || || ||||| | Sbjct 622 TGGGCCATCATGTGGGTGAGCAGCGCGTAGCTGGCGATGTTGAACGGAACGCCGAGGAAC 563 Query 29941 ATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTCACGTAAAACTGA 30000 ||||| | | |||||| ||||| || ||||||| |||||| ||||| ||||| Sbjct 562 ATGTCGGCGCTGCGCTGGTACAGCTGGCAGGAGAGCTTGCCGTCGGCGACGTAGAACTGG 503 Query 30001 CACATGGTGTGGCACGGAGGAAGAGCCATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCAC 30060 | | | ||||||||| | || ||||| | | ||| | |||||| || | Sbjct 502 AAGAAAGCGTGGCACGGCGCCAGGGCCATCTGCGGAATGTCGGCGACGTTCCACGCCGAA 443 Query 30061 ACGATGATGCGCC 30073 |||||||| |||| Sbjct 442 ACGATGATCCGCC 430 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408547854721865