Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_017972.1 Length=280538 Score E Sequences producing significant alignments: (Bits) Value seq26 199 7e-46 seq1909 161 2e-34 >seq26 Length=69211 Score = 199 bits (220), Expect = 7e-46 Identities = 295/408 (72%), Gaps = 15/408 (4%) Strand=Plus/Minus Query 22960 TAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCAACCTTCGCCA 23019 ||||| |||||||||||||| || ||||| |||||||| || || || |||||| Sbjct 65458 TAGGACACTTCGCACTCTTCGTCGGATTCGAAGAACAGCATCTGCGCCACGCCTTCGTTG 65399 Query 23020 GCGTAGATCAGTGCCGGGCTTGGTG-TGGTATTGGAAAACTCCAGAGTAAGCGAGCCTTT 23078 |||||||| |||||| | |||| |||| ||||| |||||||| || | || ||| || Sbjct 65398 GCGTAGATTTTTGCCGG-CAAGGTGGTGGTGTTGGAGAACTCCAGGGTGA-CGTGCCCTT 65341 Query 23079 CC-ATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATACGTCGATT 23137 || |||| || ||||||||||| ||||| |||||||||||||| ||||| || || || Sbjct 65340 CCCATTCCGGCTCCAGCGGCGTCACGTTGACGATGATGCCGCAGCGCGCGTAGGTGCTTT 65281 Query 23138 TGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGTGTTTGCCA 23197 |||| ||||||||| | || | |||||| || |||| ||| ||| |||| Sbjct 65280 TGCCCAGGCAGATAGTCAGGACATTACGCGGGATACGGAAGAATTCGACGGTGCGCGCCA 65221 Query 23198 GTGCGAAACTGTTCGGCGGAATGAT-CAGGCCTTGGCCGTTTGGAACGTGCTTCGTAACG 23256 | || || ||| ||||| ||||| ||| | | | | ||| ||| ||| ||| Sbjct 65220 GGGCAAAGGAGTTTGGCGGGATGATGCAGACGTCG--CTCTTG--ACG----TCG--ACG 65171 Query 23257 AAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGTTGGTGAAAACC 23316 || | | |||| ||| || || |||||||| || || | ||||||||| ||| Sbjct 65170 AAGCTTTTTTCGTCGAAGTTTTTCGGATCGACGGTTGCCGAGTTGATGTTGGTGAACACC 65111 Query 23317 TTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCG 23364 ||||| || | |||| || | |||||||||||||||||||| ||| Sbjct 65110 TTGAACTCATCGGCGCAGCGTACGTCGTAGCCGTAGCTGGAAACCCCG 65063 >seq1909 Length=8761 Score = 161 bits (178), Expect = 2e-34 Identities = 295/430 (69%), Gaps = 14/430 (3%) Strand=Plus/Minus Query 22950 GCGGTCGGCGTAGGAAACTTCGCACTCTTCATCAGATTCAAAGAACAGAATTTGTGCGCA 23009 |||||| ||| || ||||||| |||| || ||||| |||||||| | ||| || Sbjct 5911 GCGGTCCTTGTACGACGTTTCGCACACTTCGTCGGATTCGAAGAACAGCACTTGCGCCAC 5852 Query 23010 ACCTTCGCCAGCGTAGATCAGTGCCGGGCTTGGTGTGGTATTGGAAAACTCCAGAGTAAG 23069 ||||| |||||||| ||||| || || || |||||||||||||| || | Sbjct 5851 GCCTTCATTGGCGTAGATTTTCGCCGGCAACGGCGTCGTGTTGGAAAACTCCAGGGTCAC 5792 Query 23070 CGAGCCTTTCCATTCTGGTTCCAGCGGCGTGACGTTTACGATGATGCCGCAACGCGCATA 23129 |||||| |||||| ||||| | ||| |||||||| |||||||||||||| |||||||| Sbjct 5791 ATAGCCTTCCCATTCCGGTTCGAACGGGGTGACGTTGACGATGATGCCGCAGCGCGCATA 5732 Query 23130 CGTCGATTTGCCGAGGCAGATAACTAATACGTCACGCGGAATGTTGAAGTGTTCCGGCGT 23189 ||| ||||| ||||| || | |||| || || ||| ||| | ||| || Sbjct 5731 CGTGCTCTTGCCCAGGCAAATCGTCAGCACGTTGCGGGGGATGCGGAAATACTCCACGGT 5672 Query 23190 GTTTGCCAGTGCGAAACTGTTCGGCGGAATGAT----CAGGCCTTGGCCGTTTGGAACGT 23245 || || ||||| ||||||||| ||||| || ||||| ||| || Sbjct 5671 ACGGGCAAGCGCGAACGAGTTCGGCGGGATGATGCAGTAGCCCTTGCCCG------AC-- 5620 Query 23246 GCTTCGTAACGAAATTGTCTTCGGTGAAATTCTTTGGATCGACAACCGCGTTATTCAGGT 23305 | ||| ||||| || | || |||| ||| || ||||| | | | | || | || Sbjct 5619 ACATCG--ACGAAGTTATTCGCGTCAAAATCCTTGGGGTCGACGATGGTGGTGTTGATGT 5562 Query 23306 TGGTGAAAACCTTGAATTCGTTACCGCAACGAATATCGTAGCCGTAGCTGGAAACACCGT 23365 |||| || | |||||| |||| |||| || || || ||||| |||||||| |||| Sbjct 5561 TGGTAAACAGCTTGAACTCGTCGGCGCAGCGGATGTCATAGCCATAGCTGGAGGTGCCGT 5502 Query 23366 AGGGAATGAT 23375 ||| || ||| Sbjct 5501 AGGAAACGAT 5492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 897436465020400