Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_017981.1 Length=49981 Score E Sequences producing significant alignments: (Bits) Value seq45 167 7e-37 seq1321 147 7e-31 seq685 145 2e-30 seq1320 132 2e-26 seq737 122 3e-23 seq833 118 3e-22 >seq45 Length=185997 Score = 167 bits (184), Expect = 7e-37 Identities = 231/321 (72%), Gaps = 2/321 (1%) Strand=Plus/Minus Query 25954 TGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTT 26013 |||||||| || | || |||||| |||||||||||||| |||| | |||||| ||| Sbjct 40358 TGCATGGTGCCTTGCATGTCGACCACGATTTCAGTGGTGTAACGCTTGATGCCGTCTTTT 40299 Query 26014 TCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTAC 26073 ||||||| |||||||| ||| | || || ||||| ||||| |||||||| |||||| Sbjct 40298 TCCCACTCGCGGGTTTGCAGCTTGCCTTCGATGTAGACCTGCGAACCTTTGCGCAGGTAT 40239 Query 26074 TCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCT 26133 || || |||||||| || |||||||| |||| | || || |||||||| || || Sbjct 40238 TCACCGGCGATCTCTGCAACCTTGCCGAACATCGACACACGGTGCCATTCGGTTTTCTCG 40179 Query 26134 TTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCG 26193 ||| | |||||| ||||| ||| |||| ||| |||||| | | | ||||| Sbjct 40178 ACCTTCTGGCCGGTTTGCTTGTCGGTCCACTGTTCGCTGGTCGCCAGACTCAGGTTGGTC 40119 Query 26194 ACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGT-TCCCCAGGTTACCGACAAG 26252 || ||| || || |||| ||| || | || ||||| | || || | ||||||| | Sbjct 40118 ACGGCGTTACCGTTCGGCAAGTAGCGAACTTCGGGATCCTGGCCGCATG-TACCGACCAA 40060 Query 26253 GATTACTTTATTTACGCCGCG 26273 || ||||| || || || || Sbjct 40059 TATGACTTTGTTAACCCCACG 40039 >seq1321 Length=3862 Score = 147 bits (162), Expect = 7e-31 Identities = 228/326 (70%), Gaps = 0/326 (0%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||||||| ||| || | |||| Sbjct 2921 CATCTGCATGGTGCCCGTGGTCTTAACAAGAATTTCAGTGACGTAACGGGTGATACCGTT 2862 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| ||||||||||| ||||| ||||| | || || ||| Sbjct 2861 ATCTTCCCAGCTACGGGTACGGAGTTGCCCCTCGATGTAGACCTGCGCGCCCTTGCGCAG 2802 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || || || || | ||||| | |||||| |||||||| ||||| |||||||| ||| Sbjct 2801 ATATTCACCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGGTGCCATTCCGTCTG 2742 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||||||||||| || || || | ||| Sbjct 2741 CTCCCGCATCTCCCCCGTCTGTTTGTCACGCCAGCTTTCTGATGTGGCCACCTGCAGGTT 2682 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || ||||| ||||| Sbjct 2681 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCATTGCCCAGACGCCCGAC 2622 Query 26250 AAGGATTACTTTATTTACGCCGCGTG 26275 ||||| || || || | || |||| Sbjct 2621 GAGGATGACCTTGTTGATACCACGTG 2596 >seq685 Length=77197 Score = 145 bits (160), Expect = 2e-30 Identities = 215/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| || || || ||||||||||| | || ||||| |||||||||| |||||| Sbjct 10856 GTCGACGACGATCTCGGTGGTGTAGCGTTTCACTCCGTCTTTTTCCCACTCGCGGGTGCG 10797 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || || || | ||| ||| ||||| ||| ||||| |||||||| || || Sbjct 10796 GAGAGTGCCTTCGACGTAGCACTGGCTCCCTTTTCGCAGATACTCACCCGCGATTTCGGC 10737 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTG 26150 | |||||| || | ||| ||||| ||||| || || || | || | ||||||||| Sbjct 10736 GATCTTGCCGAAGAACACTACGCGGTGCCACTCGGTACGCTCCTGCTGCTGGCCGGTCTG 10677 Query 26151 CTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGG 26210 |||||| ||||||||||| ||| || | ||| ||||| | || ||| ||| || || Sbjct 10676 CTTATCTTTCCAGCTTTCGCTGGTGGCCAGGGTTATGTTCGTTACGGCGTTGCCGTTCGG 10617 Query 26211 CATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGACAAGGATTACTTTATTTACGCC 26270 |||| |||| || || ||| || ||| ||||| || || ||||| || ||||| Sbjct 10616 GGTGTAGCGGACTTCCGGGTCGCCGCCGGCGTTGCCGACGAGAATCACTTTGTTGACGCC 10557 Query 26271 GCGTG 26275 |||| Sbjct 10556 TCGTG 10552 >seq1320 Length=7270 Score = 132 bits (146), Expect = 2e-26 Identities = 231/336 (69%), Gaps = 0/336 (0%) Strand=Plus/Minus Query 25950 CATCTGCATGGTTCCGCCAACGTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTC 26009 |||||||||||| || || || | |||||| ||| ||| || | |||| Sbjct 6305 CATCTGCATGGTGCCTGTGGTCTTAACAAGAATTTCGGTGACGTAACGGGTGATACCGTT 6246 Query 26010 CTTTTCCCACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAG 26069 | |||||| | ||||| || || || || ||||| ||||| | || || ||| Sbjct 6245 ATCTTCCCAGCTACGGGTGCGAAGCTGACCTTCGATGTAGACCTGCGCGCCCTTGCGCAG 6186 Query 26070 GTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCAC 26129 || ||||| || | ||||| | |||||| |||||||| |||||||||||||||||| Sbjct 6185 ATATTCGCCAGCCACTTCCGCGAGCTTGCCGAACAGCACCACGCGATGCCATTCTGTCTG 6126 Query 26130 TTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGTCGCTACGGTAATGTT 26189 || | | || || ||||| || || |||| |||| || || || || | ||| Sbjct 6125 CTCCCGCATCTCCCCTGTCTGTTTGTCACGCCAGGTTTCCGACGTGGCGACCTGCAGGTT 6066 Query 26190 GGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTTCCCCAGGTTACCGAC 26249 || |||||||| || || || |||||||||| || ||||| || |||||| || || Sbjct 6065 TGCCACTGCGCCCCCGTTGGGGATGTAACGGACTTCCGGATCTTTTCCCAGGCGTCCTAC 6006 Query 26250 AAGGATTACTTTATTTACGCCGCGTGATGCCATTAT 26285 || || || || || | ||| || |||||| || Sbjct 6005 GAGAATGACCTTGTTAATGCCACGAACTGCCATGAT 5970 >seq737 Length=22238 Score = 122 bits (134), Expect = 3e-23 Identities = 200/288 (69%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 25998 CTCAACGCCGTCCTTTTCC---CACTTGCGGGTTTTCAGTTGCCCCTCAATGTAAACCTG 26054 ||| ||||||||||| ||| | || ||||||| ||| | || || | ||| || Sbjct 8315 CTCGACGCCGTCCTTGTCCGTGTATTTACGGGTTTGCAGACGGCCTTCGACGTAGACGGA 8256 Query 26055 TGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGCTACCTTGCCAAACAGCACGACGCG 26114 |||||||| |||||||||| ||| |||| ||||| | ||| || | | | || Sbjct 8255 CGAACCTTTTTTCAGGTACTGGCCGACGATTTCCGCCAGGCGGCCGAAGAACGAAATACG 8196 Query 26115 ATGCCATTCTGTCACTTCTTTCTTTTCGCCGGTCTGCTTATCGTTCCAGCTTTCTGAGGT 26174 ||||| ||||||| |||||| | |||||| || | || ||| | | | || || Sbjct 8195 GTGCCACTCTGTCAATTCTTTTTGTTCGCCCGTGTTGCGGTCCTTCGACTTGTACGAAGT 8136 Query 26175 CGCTACGGTAATGTTGGCGACTGCGCCGCCATTAGGCATGTAACGGATCTCTGGATCGTT 26234 || |||| |||||||||| ||| |||| |||||||||| ||||| || || || Sbjct 8135 GGCCACGGCGATGTTGGCGATCGCGTCGCCGCTAGGCATGTAGCGGATTTCCGGGTCACG 8076 Query 26235 CCCCAGGTTACCGACAAGGATTACTTTATTTACGCCGCGTGATGCCAT 26282 ||||| || ||||| | ||| ||||| || || ||||||||| Sbjct 8075 GCCCAGATTGCCGACGATGATGACTTTGTTGAC------TGATGCCAT 8034 >seq833 Length=8904 Score = 118 bits (130), Expect = 3e-22 Identities = 215/309 (70%), Gaps = 12/309 (4%) Strand=Plus/Minus Query 25971 GTTGACCACAATTTCAGTGGTGTAGCGCTCAACGCCGTCCTTTTCCCACTTGCGGGTTTT 26030 || ||| | |||||| |||||||| || | | ||||| |||||||||| || |||| Sbjct 8547 GTCGACGATAATTTCGGTGGTGTACCGTTTGATACCGTCTTTTTCCCACTCTCGTGTTTG 8488 Query 26031 CAGTTGCCCCTCAATGTAAACCTGTGAACCTTTCTTCAGGTACTCGCCCGCGATCTCCGC 26090 || | || || ||||| ||||| || |||||| ||| ||||| || ||||| || || Sbjct 8487 AAGCTTACCTTCGATGTATACCTGCGATCCTTTCCGCAGATACTCACCAGCGATTTCAGC 8428 Query 26091 TACCTTGCCAAACAGCACGACGCGATGCCATTCTGTCACTTC---TTTCTTTTCGCCGGT 26147 || || ||||||| || || |||||||| ||| ||| ||||| | || || Sbjct 8427 GACTTTCCCAAACAAAGAAACACGGTGCCATTCGGTCTTTTCGACTTTCTGT---CCCGT 8371 Query 26148 CTGCTTATCGTTCCA--GCTTTCTGAGGTCGCTACGGTAATGTTGGCGACTGCGCCGCCA 26205 ||||| || |||| ||| || || || | | | | |||| ||||| || Sbjct 8370 TTGCTTGTCAGTCCACTGCTCACTT--GTTGCAAGGCTGAGATTGGTTACTGCATTACCG 8313 Query 26206 TTAGGCATGTAACGGATCTCTGGATCGTTCCC-CAGGTTACCGACAAGGATTACTTTATT 26264 || || | ||| || | |||||||| | || ||||| || || | ||| |||||||| Sbjct 8312 TTCGGTAAGTAGCGAGTTTCTGGATCTTGACCACAGGTG-CCAACCAAGATCACTTTATT 8254 Query 26265 TACGCCGCG 26273 ||||||||| Sbjct 8253 TACGCCGCG 8245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159791020834830