Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_017985.1 Length=40128 Score E Sequences producing significant alignments: (Bits) Value seq24 978 0.0 seq816 100 7e-17 seq2164 86.0 2e-12 seq1130 84.2 6e-12 >seq24 Length=857 Score = 978 bits (1084), Expect = 0.0 Identities = 638/702 (91%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 20813 GTGGCGGGGCTATTGCCATAGCATCTGTGTTAATCACTGGCCCCGGTGGTAACGATGGTC 20872 ||||||| || ||||| |||||||| ||||||||||||||||| ||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 20873 TGGAAGGTGTCAGATACAAACCATACAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATG 20932 ||||||||||||| |||| ||||||||| || | |||||||| | |||||| ||| | | Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 20933 GCCACGTCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGCAGAATGCGAAGCCC 20992 | || ||||||||||||||||||||||||||||||||| ||||||||||| |||||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 20993 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 21052 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 21053 TACCGGAAACAACGCGCGGCGCTCTTTATTCGTTCGTCTATAACGTGGGCGCAGGCAATT 21112 |||||||||||||||||||||||||||| |||||||| || ||||||||||| ||||||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 21113 TCAGAACATCGACGCTTCTTCGCAAAATCAACCAGGGCGATATCAAGGGCGCATGTGACC 21172 |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 21173 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTG 21232 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 21233 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTC 21292 |||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 496 Query 21293 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 21352 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 556 Query 21353 TGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGC 21412 || || ||||||||| |||||||| ||||| | ||| |||||||||| ||||| ||| Sbjct 557 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 616 Query 21413 CACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACAC 21472 | ||||||||||||||| |||||||||||||| || |||||| |||| |||||||| Sbjct 617 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 676 Query 21473 GAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 21514 ||||||||||||| ||||||||||||||||||||||||| || Sbjct 677 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 718 >seq816 Length=14434 Score = 100 bits (110), Expect = 7e-17 Identities = 69/78 (88%), Gaps = 4/78 (5%) Strand=Plus/Minus Query 4835 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTACGAG 4894 ||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 4895 GATG----TTATTGCTGC 4908 |||| | |||||||| Sbjct 11190 GATGCTGTTCATTGCTGC 11173 >seq2164 Length=1578 Score = 86.0 bits (94), Expect = 2e-12 Identities = 50/52 (96%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 3025 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCAGTTAAA 3076 |||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct 209 ATTCGTAATGCGAAGGTCGTAGGTTCGACTCCTATTATCGGCACCATTTCAA 260 >seq1130 Length=54118 Score = 84.2 bits (92), Expect = 6e-12 Identities = 142/200 (71%), Gaps = 7/200 (4%) Strand=Plus/Plus Query 25287 GGCGGTAATGCTGTTGAGCCTGGCATCACTGAATTGCGCGACATGATGCTTGAT-GGTCG 25345 |||||||||| || ||| | || ||| |||| | | ||| ||| |||| || || Sbjct 37597 GGCGGTAATGGCGTCGAGGCCGGTGTCATTGAAATACTTGACCGCATG-TTGACAGGCCG 37655 Query 25346 CTTCAAAGTATTCAA-CACCTGTGAGCCATTTTTTGAGGAGTTTCGCCTCTATCACCGTG 25404 |||||| || || ||||| | | | ||||| ||||| ||| | |||||||| Sbjct 37656 CTTCAAGGTGTTTTCGCACCTCAACGAC-TGGTTTGAAGAGTTCCGCATGTATCACCGCA 37714 Query 25405 ATGAAAACGGGAAGATCGTCAAGCTTAACGACGACGTGCTATCAGCCGTTCGCTATGCAT 25464 | || ||| ||||| ||||||| |||| ||| || | || ||| ||||| || | Sbjct 37715 AGGA---CGGCAAGATTATCAAGCTGGACGATGACTTGTTGTCGGCCACACGCTACGCCT 37771 Query 25465 ACATGATGCGCCGCTTCGCC 25484 |||||||||||||||||||| Sbjct 37772 ACATGATGCGCCGCTTCGCC 37791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 128266664502900