Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018269.1 Length=31766 Score E Sequences producing significant alignments: (Bits) Value seq29 120 6e-23 seq909 105 1e-18 seq74 96.9 7e-16 seq329 87.8 4e-13 seq1910 84.2 4e-12 >seq29 Length=371730 Score = 120 bits (132), Expect = 6e-23 Identities = 207/301 (69%), Gaps = 0/301 (0%) Strand=Plus/Plus Query 25059 AAATCCATGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGT 25118 ||| || |||| || ||||| || || || || | || | || ||||| |||||| | Sbjct 206202 AAAGCCCTGGCCAAGGAATTCAACTGCCCGGTGGTTGCCCTGTCGCAGCTCAACCGATCT 206261 Query 25119 CTTGAAAACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATA 25178 ||||| | | | | | || ||||| || ||||| |||||||| || || || ||||| Sbjct 206262 CTTGAGCAGCGTCCGAACAAACGCCCGATCAACTCCGACTTGCGGGAATCCGGAGCGATC 206321 Query 25179 GAACAGGATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGC 25238 || ||||||||||| | ||| || ||||||| ||||| |||||| |||| || | | Sbjct 206322 GAGCAGGATGCTGACGTGATCATGTTCGTATACCGGGACGAGGTGTATCACCCGGAGACC 206381 Query 25239 TCTGACAAAGGCATTGCCGAGATTATCATTGGCAAACACAGGAATGGCGAGCTAGGCACA 25298 | |||||||| || || || || || || ||||| | || || | ||||| Sbjct 206382 GAGCATAAAGGCATCGCTGAAATCATTATCGGTAAACAGCGTAACGGGCCAATCGGCACC 206441 Query 25299 GTGAGAGCGGCATTCATTGGGCAGTACACGCGATTTGAAAACCTATCACCAGAGAGCTAT 25358 | | ||| ||||| || | ||||| || || || ||||| | || | |||||| Sbjct 206442 ACGCGCCTGGCCTTCATCGGTAAATACACCCGCTTCGAGAACCTGGCGCCGGGCAGCTAT 206501 Query 25359 A 25359 | Sbjct 206502 A 206502 >seq909 Length=21192 Score = 105 bits (116), Expect = 1e-18 Identities = 150/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 25066 TGGCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAA 25125 |||| |||||| | || || |||||||| | || ||||| ||||| || ||| Sbjct 7752 TGGCAAAAGAACTCGGCTGCCCCGTGATCGCGCTGTCCCAGCTGAACCGCTCGCTGGAAC 7811 Query 25126 ACAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGG 25185 | | | | |||| || || | | || ||||||||||| || ||||| || || |||| Sbjct 7812 AACGCCCGAATAAACGTCCCGTGATGTCCGACTTGCGCGAATCGGGCGCTATCGAGCAGG 7871 Query 25186 ATGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACA 25245 |||| || | ||| || || ||||| ||||| ||||||||||||||| | |||| Sbjct 7872 ATGCCGACGTGATCCTGTTCATTTACCGCGACGAGGTGTATAACCCCGACTCGCCAGACA 7931 Query 25246 AAGGCATTGCCGAGATTATCATTGGCAAACA 25276 | || | ||||| || ||||| || ||||| Sbjct 7932 AGGGAACGGCCGAAATCATCATCGGTAAACA 7962 >seq74 Length=23094 Score = 96.9 bits (106), Expect = 7e-16 Identities = 204/300 (68%), Gaps = 7/300 (2%) Strand=Plus/Minus Query 24976 ttGTCGATTATTTGCAGCTTATGCGAATTGAAGGGTTCAAAGAAGGCCGAGCTAATGAAG 25035 || |||||||| ||||||| ||||| ||| |||| ||| ||| || |||||| Sbjct 5987 TTATCGATTATCTGCAGCTCATGCGCTGCCCAGG--TCAA-GAAAACCGGGCGAATGAA- 5932 Query 25036 TATCAGAA--ATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAATTGTCCAATGAT 25093 ||||| || || || |||||||| | |||| || || | || || || | | Sbjct 5931 -ATCAGCGCTATCTCCCAAGCACTTAAAGCGCTGGCCAAGGAGATGAACTGCCCTGTAGT 5873 Query 25094 CGCGTTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGCCCAATTAACTC 25153 ||| | || ||||| || || | || ||| | | | | | |||||||| || ||| | Sbjct 5872 CGCTCTTTCTCAGCTCAATCGTGAACTGGAACGCCGCCCGAACAAGCGCCCTATCAACGC 5813 Query 25154 AGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCATTGATATACCG 25213 || ||||| || ||||| || |||||||| || || || ||| || | ||||| Sbjct 5812 CGATTTGCGTGATAGCGGCGCCATCGAACAGGACGCGGACCTGATCATGTTCGTGTACCG 5753 Query 25214 AGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATTATCATTGGCAA 25273 ||||| ||| |||| || | | ||||||||||||| || || ||||| ||||| Sbjct 5752 CGACGAGAAATATCACCCGGAGACCGAACACAAAGGCATTGCAGAAATCATCATCGGCAA 5693 >seq329 Length=155757 Score = 87.8 bits (96), Expect = 4e-13 Identities = 145/207 (70%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 25068 GCGAAAGAATTTAATTGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAA-A 25126 |||||||| | ||||| || || | ||| | || ||||| ||||||| || || | Sbjct 6514 GCGAAAGAGATGAATTGCCCGGTGGTTGCGCTTTCCCAGCTCAACCGAGAACTGGAGCGA 6455 Query 25127 CAGACAGGATAAGCGCCCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGA 25186 | | || ||||||| || || ||| ||||| |||| || || ||||| |||||||| Sbjct 6454 CGGCCAA-ATAAGCGTCCGATCAACGCAGACCTGCGTGATAGCGGTGCGATTGAACAGGA 6396 Query 25187 TGCTGATCTAATCGCATTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAA 25246 || || || || || | ||||| ||||| ||||| |||| | ||| |||| Sbjct 6395 CGCGGACCTGATTATGTTCGTCTACCGGGACGAGGTGTACCACCCTCAGAGCGAACACAA 6336 Query 25247 AGGCATTGCCGAGATTATCATTGGCAA 25273 ||||||||| || || || | ||||| Sbjct 6335 AGGCATTGCAGAAATCATTCTCGGCAA 6309 >seq1910 Length=22743 Score = 84.2 bits (92), Expect = 4e-12 Identities = 171/254 (67%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 25023 CGAGCTAATGAAGTATCAGAAATTTCGAAATCACTTAAATCCATGGCGAAAGAATTTAAT 25082 || || || |||||||| || ||||| |||||| || | |||| |||||| | Sbjct 793 CGGGCCAACGAAGTATCCGAGATTTCCCGATCACTCAAGGCATTGGCCAAAGAAATGGGA 734 Query 25083 TGTCCAATGATCGCGTTATCACAGCTTAACCGAGGTCTTGAAAACAGACAGGATAAGCGC 25142 || ||| | || ||| |||| || | || || ||||| | | | | |||| || Sbjct 733 TGCCCAGTAATTGCGCTATCTCAATTAAATCGGTCGCTTGAGACACGTCCGAATAAACGA 674 Query 25143 CCAATTAACTCAGACTTGCGCGAGTCTGGCGCGATAGAACAGGATGCTGATCTAATCGCA 25202 ||| | | || || | || ||||| || || || || |||||||| || | ||| Sbjct 673 CCAGTCATGTCTGATCTCCGAGAGTCCGGAGCCATTGAGCAGGATGCCGACGTCATCATT 614 Query 25203 TTGATATACCGAGACGAAGTGTATAACCCCGACAGCTCTGACAAAGGCATTGCCGAGATT 25262 || | ||||| ||||| ||||||||||| ||| | || || || | ||||||| Sbjct 613 TTCCTTTACCGCGACGAGGTGTATAACCCGGACTCCGAAGAGAAGGGGACTGCCGAGGCC 554 Query 25263 ATCATTGGCAAACA 25276 ||||||| ||||| Sbjct 553 ATCATTGCAAAACA 540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101512714675680