Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018275.1 Length=39783 Score E Sequences producing significant alignments: (Bits) Value seq24 715 0.0 seq816 105 2e-18 seq1130 93.3 1e-14 seq400 91.5 4e-14 >seq24 Length=857 Score = 715 bits (792), Expect = 0.0 Identities = 435/461 (94%), Gaps = 0/461 (0%) Strand=Plus/Plus Query 37326 GTGGCGGGGCTATTGCTATAGCATCTGTGTTAATCACTGGACCGAGTGGTAACGATGGTC 37385 ||||||| || |||||||||||||| |||||||||||||| || |||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 37386 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGCCACG 37445 ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 37446 GACACACCGGAAAAGACATCATGCTCGGTAAAACGTATACCGAAGCAGAATGCAAAGCCC 37505 | || || ||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 37506 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 37565 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 37566 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTCTATAACGTGGGCACAGGCAATT 37625 ||||||||||||||||||||||||||||||||||||| || ||||||||| | ||||||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 37626 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAGGGCGCATGTGATC 37685 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 37686 AGCTACGGCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACCCGTCGTG 37745 ||||||| ||||||||||| ||||||||||||||||||||||| || ||||| ||||||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 37746 AGATTGAGCGTGAAGTCTGTTTGTGGGGGCAACAATGAGCA 37786 |||||||||||||| ||||||||||||| || |||||| || Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACA 477 Score = 176 bits (194), Expect = 1e-39 Identities = 195/261 (75%), Gaps = 23/261 (9%) Strand=Plus/Plus Query 37882 TAACCGCGATTATCTCCGCTCTGATTATCTGCATCATCGTCTGTCTGTCATGGGCTGTTA 37941 ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| Sbjct 481 TAACCGCGATTATCTCCGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTA 540 Query 37942 ATCATTACCGTGATAACGCCATCGCCTACAAAGAGCAGCGCGATAAA---GCCACA---- 37994 |||||||||||||||||||||| ||||||||| |||||||| ||| |||| | Sbjct 541 ATCATTACCGTGATAACGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAAC 600 Query 37995 --------------TCCACAATCGCTGACATGCAGAAGCGTCAACGTGACGTAGCAAAAC 38040 | |||| |||||||||||| ||| || ||||| || || || Sbjct 601 TGAAGCTGGCGAACGCGGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCAC 660 Query 38041 TCGACGCCAGATATACAAAGGAGCTTGCTGATGCTAACGC-GACTATCGAAAGTCTCCGT 38099 | || | | ||| || |||||| | ||| |||| || || || || || ||| ||| Sbjct 661 TGGATGAAAAATACACGAAGGAGTTAGCTAATGCGAAAGCTGAAAAT-GATGCTCTGCGT 719 Query 38100 GCTGATGTTTCTGCTGGTCGT 38120 | || |||| | ||||||||| Sbjct 720 GATGGTGTTGCCGCTGGTCGT 740 >seq816 Length=14434 Score = 105 bits (116), Expect = 2e-18 Identities = 156/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 30569 GGAGCATCGCGTGGCAGAACTCGACGATGGCTACACCCGGACTGCAAATACACTGCTGGA 30628 ||||| ||||||||||| ||||||||||| || || || | ||||||| ||||||| Sbjct 4111 GGAGCGGCGCGTGGCAGATCTCGACGATGGTTATACGCGCATTGCAAATGAGTTGCTGGA 4052 Query 30629 AGCTGTCATGCTTTCTGGGCTTACTCAACATCAGCTACTGATTGTTATGGCTGTGTGGCG 30688 |||||| ||||| | || | || || || ||||| ||| | | ||||||| ||| Sbjct 4051 AGCTGTGATGCTGGCCGGATTAACACAGCACCAGCTTCTGGTCTTCCTGGCTGTCATGCG 3992 Query 30689 CAAGACATACGGTTATAACaaaaaaaTAGATTGGATCGGAAATGAACAGTTCGCTGAACT 30748 ||| ||||| || | ||| |||| | | |||||| | | || || || | | ||| | Sbjct 3991 CAAAACATATGGCTTTAATAAAAGACTGGATTGGGTGAGCAACGAGCAACTTTCCGAATT 3932 Query 30749 CACTGGCATGGCACCAACCAAATGTTCTACCGCCAAAAACG 30789 || || || || | ||| |||||| | || |||| || Sbjct 3931 GACCGGGATATTGCCGAACAAGTGTTCTGCTGCAAAAAGCG 3891 Score = 105 bits (116), Expect = 2e-18 Identities = 78/90 (87%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 22060 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGTGCGAG 22119 ||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 11250 CTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCGAG 11191 Query 22120 GATTGTTATTCAGTGCCGATATTTACCTTT 22149 || || | |||| ||| | ||| || ||| Sbjct 11190 GA-TGCTGTTCATTGCTGCTATACACTTTT 11162 >seq1130 Length=54118 Score = 93.3 bits (102), Expect = 1e-14 Identities = 88/110 (80%), Gaps = 7/110 (6%) Strand=Plus/Plus Query 1781 TTTGAAGAGTTCCGCCTATATCATCGCGATGAGAACGGCAAGATTGTCAAGACCAACGAT 1840 ||||||||||||||| | ||||| ||| | || |||||||||| ||||| ||||| Sbjct 37687 TTTGAAGAGTTCCGCATGTATCACCGCAAGGA---CGGCAAGATTATCAAGCTGGACGAT 37743 Query 1841 GA--TGTGCTCGATGCTACTCGCTACGGCTACATGATGCGCCGCTTCGCC 1888 || ||| ||| || || ||||||| |||||||||||||||||||||| Sbjct 37744 GACTTGTTGTCG--GCCACACGCTACGCCTACATGATGCGCCGCTTCGCC 37791 >seq400 Length=38681 Score = 91.5 bits (100), Expect = 4e-14 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 24939 TCTTTGGTTTCCAGCTCATCCAGCAGCGCCAGCATGGTGGCGTGGTTGGCTGCGGCGATA 24998 ||||||| |||||||||||||||||||||||||| ||||||| | ||||||||||||||| Sbjct 4489 TCTTTGGCTTCCAGCTCATCCAGCAGCGCCAGCACGGTGGCGGGTTTGGCTGCGGCGATA 4430 Query 24999 AAT 25001 || Sbjct 4429 TAT 4427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127162848108450