Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018279.1 Length=49116 Score E Sequences producing significant alignments: (Bits) Value seq24 955 0.0 seq215 226 9e-55 seq816 105 2e-18 >seq24 Length=857 Score = 955 bits (1058), Expect = 0.0 Identities = 633/702 (90%), Gaps = 0/702 (0%) Strand=Plus/Plus Query 46300 GTGGCGGGGCTATTGCTATAGCATCTGTATTAATCACTGGCCCCGGTGGTAACGATGGTC 46359 ||||||| || |||||||||||||| || |||||||||||||| ||||||||||||||| Sbjct 17 GTGGCGGAGCAATTGCTATAGCATCAGTGTTAATCACTGGCCCAAGTGGTAACGATGGTC 76 Query 46360 TGGAAGGTGTCAGATACAAACCATATAAGGACGTAGTTGGTGTGTTGACTGTGTGTTATG 46419 ||||||||||||| |||| |||||| || || | |||||||| | |||||| ||| | | Sbjct 77 TGGAAGGTGTCAGCTACATACCATACAAAGATATTGTTGGTGTATGGACTGTATGTCACG 136 Query 46420 GCCACACCGGAAAAGACATCATGCCTGGTAAAACGTATACCGAAGCAGAATGCAAATCCC 46479 | || || |||||||||||||||| ||||||||||||||| |||||||||||||| ||| Sbjct 137 GGCATACAGGAAAAGACATCATGCTCGGTAAAACGTATACCAAAGCAGAATGCAAAGCCC 196 Query 46480 TCCTGAATAAAGACCTTGTCACTGTCGCCAGACAAATTAACCCGTACATCAAAGTCGATA 46539 |||||||||||||||||| ||| |||||||||||||||||||||||||| ||||| |||| Sbjct 197 TCCTGAATAAAGACCTTGCCACGGTCGCCAGACAAATTAACCCGTACATAAAAGTTGATA 256 Query 46540 TACCGGAAACAACGCGAGGCGCCCTTTACTCGTTCGTCTACAACGTGGGCGCAGGTAATT 46599 |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||| Sbjct 257 TACCGGAAACAACGCGCGGCGCTCTTTACTCGTTCGTTTACAACGTGGGCGCTGGCAATT 316 Query 46600 TCAGAACATCGACGCTTCTTCGCAAAATAAATCAGGGTGATATCAAAGGCGCATGTGACC 46659 ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| | Sbjct 317 TCAGAACATCGACGCTTCTTCGCAAAATAAACCAGGGCGATATCAAAGGCGCATGTGATC 376 Query 46660 AGCTACGTCGCTGGACATACGCTGGCGGTAAGCAATGGAAAGGGCTGATGACTCGCCGTG 46719 ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| |||| Sbjct 377 AGCTACGTCGCTGGACATATGCTGGCGGTAAGCAATGGAAAGGTCTCATGACTCGTCGTG 436 Query 46720 AGATTGAGTGTGAAGTCTGTTTGTGGGGGCAGCAATGAGCAGAGTAACCGCGATTATCTC 46779 |||||||| ||||| ||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 437 AGATTGAGCGTGAAATCTGTTTGTGGGGTCAGCAATGAACAGAGTAACCGCGATTATCTC 496 Query 46780 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 46839 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 497 CGCTCTGGTTATCTGCATCATCGTCTGCCTGTCATGGGCTGTTAATCATTACCGTGATAA 556 Query 46840 TGCAATCGCCTACAAAGAGCAGCGCGATAAAAAAGTCAGTGAACTGAAGCAGGCGACCGC 46899 || || ||||||||| |||||||| ||||| | ||| |||||||||| ||||| ||| Sbjct 557 CGCCATTACCTACAAAGCCCAGCGCGACAAAAATGCCAGAGAACTGAAGCTGGCGAACGC 616 Query 46900 CACCATTACTGACATGCAGCAGCGCCAGCGTGATGCTGATGCACTCGATGCTAAATACAC 46959 | ||||||||||||||| |||||||||||||| || |||||| |||| |||||||| Sbjct 617 GGCAATTACTGACATGCAGATGCGCCAGCGTGATGTTGCTGCACTGGATGAAAAATACAC 676 Query 46960 GAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTTCG 47001 ||||||||||||| ||||||||||||||||||||||||| || Sbjct 677 GAAGGAGTTAGCTAATGCGAAAGCTGAAAATGATGCTCTGCG 718 >seq215 Length=48791 Score = 226 bits (250), Expect = 9e-55 Identities = 352/497 (71%), Gaps = 11/497 (2%) Strand=Plus/Plus Query 48522 GGCTGATACCTGCGAGCGAAGTCAGTGAGTGGGT--AAGCCGCCAAATCCTCAGCGATAC 48579 |||| | |||||| |||||| | || ||| | |||||| | |||||| ||| || Sbjct 12265 GGCTCACGCCTGCGCCCGAAGTGTGGGAATGGCTCCAAGCCG--AGATCCTCGCCGACAC 12322 Query 48580 CGGCAGCATCCATAACCCTGACCACGAACACCTGTTAGAGGCTGACCTCTGCTTCATGTG 48639 ||||| ||| || ||| ||||| | ||||| | || || ||| || | ||||||| Sbjct 12323 CGGCACCATTCACAACGAAGACCATGCCCACCTACTGGATGCAGACATCCGGATCATGTG 12382 Query 48640 GGCGTC--CGATTCGTTCGCTAAGAAAGGGCGGTATGTCCTCGGCCAAGCCGAGCAGGTA 48697 |||||| ||| ||||| ||| | || || ||| | ||||| |||||||| ||| Sbjct 12383 GGCGTCGTCGA--GCTTCGCCAAGCAGGGTCGCACAGTCTTGGGCCAGGCCGAGCAAGTA 12440 Query 48698 ATGCTCCGCGCCGGTGGTTGGCAGAAAGCCAGAATGGAACAGCAGATGTATGAATGGTTC 48757 | | |||||||| |||||||||||||||| ||||| || |||||| ||| |||||| Sbjct 12441 GCGTTTCGCGCCGGCGGTTGGCAGAAAGCCATGATGGAGCAACAGATGCGTGATTGGTTC 12500 Query 48758 GGGCGCATCCCGAAGTTCATCATCACGCTGGCAGCCGATTACTGCTCACAATGCAATGAC 48817 || | ||| |||||||| || ||||| ||||| |||||| | || |||| ||| Sbjct 12501 GGCGATGTGCCGGCATTCATCATTACCCTGGCTGCCGACTACTGCGCCCAGTGCAGCGAC 12560 Query 48818 CTCGAGTTCTGCGCACTGGTAGAGCATGAGCTTTACCACATCGCACAGGCCACCGATGAT 48877 || ||||||||||| || | ||||| |||||||| ||| | || || || ||||| | Sbjct 12561 CTTGAGTTCTGCGCCTTGATCGAGCACGAGCTTTATCACCTGGCTCACGCGACCGACAAG 12620 Query 48878 TTCGGAGCGCCTAAGTTCAACAAAGAGACCGGGCATCCATTGCTTACACTGCGCGGCCAC 48937 | ||| || |||| | | |||| | ||| || | | | |||| |||||| Sbjct 12621 TACGGTCAACCAGCATTCACCCA--AGACGGTGCA-CCGAAGATCAAGCTGCAGGGCCAC 12677 Query 48938 GACGTCGAAGAATTCATTGGTGTCGTACGTCGATACGGTGCCAGCAAAGAAGTACAGGAG 48997 ||||| ||||| ||| | |||||||| || || || ||||| ||| || || || | | Sbjct 12678 GACGTGGAAGAGTTCGTCGGTGTCGTCCGCCGCTATGGTGCAAGCCCTGACGTTCAAGCG 12737 Query 48998 CTTGTTGATGCGGCCAA 49014 | || ||||| || || Sbjct 12738 TTGGTGGATGCTGCAAA 12754 Score = 104 bits (114), Expect = 7e-18 Identities = 245/370 (66%), Gaps = 0/370 (0%) Strand=Plus/Plus Query 1 ATGGCGACACTGAAAGGTGAGGTCAAAGCCTTCATCGTTCAGTCTCTTGCCTGTTTCGAT 60 ||||| | |||||| |||||| || ||||||||||||| | || || || || || Sbjct 12856 ATGGCAGCCCTGAAAAATGAGGTGAAGAGCTTCATCGTTCAGGCGCTGGCGTGCTTTGAC 12915 Query 61 ACTCCATCCCAGGTGGTTGAGCTGGTCAAAAAAGAATTTGGCCTGAGCATCACACGTCAG 120 || |||||||||||||| || ||||| || |||| || | | | || ||| Sbjct 12916 ACCCCATCCCAGGTGGTGGAAGCCGTCAAGAACGAATACGGGGTTGTGGTGAGCCGCCAG 12975 Query 121 CAGGTCGAATCCCACGACCCGACGAAAGCAAACGGCAGGGGCCTGGCGCAGAAATGGGTG 180 ||||| || | |||||||| || || | || | ||| |||||| ||| |||||| Sbjct 12976 CAGGTGGAGACGCACGACCCAACCAAGTCCGCGGGTAAGGGTCTGGCGGTGAAGTGGGTG 13035 Query 181 GACATGTTCAATGCCACCCGTAAACGATTCCAGAATGAGATCGCCGACATACCGATCGCG 240 | | ||| | | |||| | || || |||| | |||| ||| || || ||||| || Sbjct 13036 ACCCTTTTCCACGACACCAGGAAGCGGTTCCGAGAGGAGACCGCAGAGATCCCGATTGCC 13095 Query 241 AACAAAGCGTACCGGTTACGCGTTCTCGACCGAATGGCGACCAATGCTGAAAAGATGAAG 300 ||| || | |||| | || | || | || |||| || || || || ||| Sbjct 13096 AACCGCGCCTTCCGGCTTCGTGGCCTGGGGCGGCTGGCCGGGAAGGCCGAGAACATGCGC 13155 Query 301 AACTACGGCATGACCTCGCAACTTATCGAGCAGGCCGCCAAAGAAATGGGCGATGCCTAC 360 ||| | |||| | || ||| |||||| || |||||||| | ||| || | ||| Sbjct 13156 AACCTGGCGCTGACTGCCCAGCTTTACGAGCAAGCAGCCAAAGAGACGGGTGACGTCTAT 13215 Query 361 ACTAATCGCC 370 ||||||| Sbjct 13216 GTCAATCGCC 13225 >seq816 Length=14434 Score = 105 bits (116), Expect = 2e-18 Identities = 72/79 (91%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 27830 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCCCGCGAGCGCG 27889 ||||||||||||||||||||||||||||||||||||||||||||||||| || || ||| Sbjct 11252 ATCTCCATAAAACAAAACCCGCCGTAGCGAGTTCAGATAAAAGAAATCCTCGTCAGTGCG 11193 Query 27890 AGGAT--TGTT-ATTGCTG 27905 ||||| |||| ||||||| Sbjct 11192 AGGATGCTGTTCATTGCTG 11174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157023481179180