Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018452.1 Length=61847 Score E Sequences producing significant alignments: (Bits) Value seq737 172 2e-38 seq685 156 2e-33 seq1321 105 3e-18 seq1320 84.2 9e-12 >seq737 Length=22238 Score = 172 bits (190), Expect = 2e-38 Identities = 243/339 (72%), Gaps = 12/339 (4%) Strand=Plus/Plus Query 9963 CATGGCATCCGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCG 10022 ||||||||| ||||||||||||||| ||||||||||||| ||| |||||||||| ||| Sbjct 8033 CATGGCATCAGTCAACAAAGTCATCATCGTCGGCAATCTGGGCCGTGACCCGGAAATCCG 8092 Query 10023 CTACCTCCCGAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAA 10082 |||| | || ||||||||||| ||| |||||||| | | || || ||| ||||| Sbjct 8093 CTACATGCCTAGCGGCGACGCGATCGCCAACATCGCCGTGGCCAC-----TTCG-TACAA 8146 Query 10083 GGACAAGG--CG----AGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTT 10136 | |||| || | ||||| || |||| ||| || |||||||| | || Sbjct 8147 GTCGAAGGACCGCAACACGGGCGAACAAAAAGAATTGACAGAGTGGCACCGTATTTCGTT 8206 Query 10137 CTTCGGCCGCCTCGCCGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACAT 10196 |||||||||||| || || ||||||| | |||||||| || || || | |||||| | Sbjct 8207 CTTCGGCCGCCTGGCGGAAATCGTCGGCCAGTACCTGAAAAAAGGTTCGTCCGTCTACGT 8266 Query 10197 CGAGGGCCGCATCCGCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGAC 10256 ||| ||||| | | || || || | ||| || | |||| || ||| | || Sbjct 8267 CGAAGGCCGTCTGCAAACCCGTAAATACACGGACAAGGACGGCGTCGAGAAGTACGCAAC 8326 Query 10257 CGAGATCGTCGCCGAGAAGATGCAGATGCTCGGCGACCG 10295 ||| ||| |||| || ||||||| ||||| |||| ||| Sbjct 8327 CGACATCATCGCGGAACAGATGCAAATGCTGGGCGGCCG 8365 >seq685 Length=77197 Score = 156 bits (172), Expect = 2e-33 Identities = 217/301 (72%), Gaps = 5/301 (2%) Strand=Plus/Plus Query 9972 CGTCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCC 10031 |||||||||||| || ||||||||||| ||||| |||||||||| ||||||| ||| Sbjct 10559 CGTCAACAAAGTGATTCTCGTCGGCAACGCCGGCGGCGACCCGGAAGTCCGCTACACCCC 10618 Query 10032 GAGCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGC 10091 || |||| |||| | | ||||| ||| || || | ||| ||| || || ||| Sbjct 10619 GAACGGCAACGCCGTAACGAACATAACCCTGGCCACCAGCGAAAGCTGGAAAGATAAGCA 10678 Query 10092 GAGCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGC 10151 || |||| || | |||| ||||| ||||||||||| ||||||||| |||| Sbjct 10679 GACCGGCCAGCAGCAGGAGCGTACCGAGTGGCACCGCGTAGTGTTCTTCGGCAAGATCGC 10738 Query 10152 CGAGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGT-CTACATCGAGGGCCGCATCC 10210 ||| |||| | ||||| ||||| || || | ||| || |||| |||| ||| ||| Sbjct 10739 CGAAATCGCGGGTGAGTATCTGCGAAAAGG-GAGCCAGTGCTACGTCGAAGGCACTCTCC 10797 Query 10211 GCACGCGGAAGTGGCAGGATAACGCCGGCCAGGATCGCTACACGACCGAGATCGTCGCCG 10270 |||| || |||| ||| || | ||| | | |||||||| ||||||||||||| || Sbjct 10798 GCACCCGCGAGTG---GGAAAAAGACGGAGTGAAACGCTACACCACCGAGATCGTCGTCG 10854 Query 10271 A 10271 | Sbjct 10855 A 10855 >seq1321 Length=3862 Score = 105 bits (116), Expect = 3e-18 Identities = 180/261 (69%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 9974 TCAACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGA 10033 ||||||| |||||||||||||| ||| ||| || |||||| ||| ||| |||| | Sbjct 2605 TCAACAAGGTCATCCTCGTCGGGCGTCTGGGCAATGATCCGGAAGTCCGTTACATCCCCA 2664 Query 10034 GCGGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGA 10093 ||| | |||| | | ||| | | | || || | || ||| ||||| || Sbjct 2665 ACGGGGGCGCAGTGGCAAACCTGCAGGTGGCCACATCAGAAAGCTGGCGTGACAAACAGA 2724 Query 10094 GCGGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCG 10153 || |||||| ||| ||| |||||||||||||| | |||||| ||||| | Sbjct 2725 CGGGGGAGATGCGGGAGCAGACGGAATGGCACCGCGTGGTGCTGTTCGGCAAGCTCGCGG 2784 Query 10154 AGATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCA 10213 | | | | || || |||||||||||||||| ||||||||||||||| | |||| | Sbjct 2785 AAGTGGCTGGTGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAGGGGCAACTCCGTA 2844 Query 10214 CGCGGAAGTGGCAGGATAACG 10234 | || | ||| | ||||||| Sbjct 2845 CCCGTAGCTGGGAAGATAACG 2865 >seq1320 Length=7270 Score = 84.2 bits (92), Expect = 9e-12 Identities = 174/259 (67%), Gaps = 0/259 (0%) Strand=Plus/Plus Query 9976 AACAAAGTCATCCTCGTCGGCAATCTCGGCGCCGACCCGGAAACCCGCTACCTCCCGAGC 10035 ||||| ||||| ||||| || || || || |||||| ||| ||| |||| | | Sbjct 5991 AACAAGGTCATTCTCGTAGGACGCCTGGGAAAAGATCCGGAAGTCCGTTACATCCCCAAC 6050 Query 10036 GGCGACGCAATCTCCAACATCCGCCTCGCTACGACCGATCGCTACAAGGACAAGGCGAGC 10095 || | |||| | | ||| | | |||| ||| | || || ||||| || Sbjct 6051 GGGGGCGCAGTGGCAAACCTGCAGGTCGCCACGTCGGAAACCTGGCGTGACAAACAGACA 6110 Query 10096 GGCGAGATGAAGGAATCGACCGAATGGCACCGCGTCAGCTTCTTCGGCCGCCTCGCCGAG 10155 || |||||| ||| ||| |||||||| ||||| | |||||| ||||| || Sbjct 6111 GGGGAGATGCGGGAGCAGACAGAATGGCATCGCGTGGTGCTGTTCGGCAAGCTCGCGGAA 6170 Query 10156 ATCGTCGACGAGTACCTGCGCAAGGGCGCGCCGGTCTACATCGAGGGCCGCATCCGCACG 10215 | | | ||| || |||||||||||||||| |||||||||||| || | | ||||| Sbjct 6171 GTGGCTGGCGAATATCTGCGCAAGGGCGCGCAGGTCTACATCGAAGGTCAGCTTCGCACC 6230 Query 10216 CGGAAGTGGCAGGATAACG 10234 || | ||| | ||||||| Sbjct 6231 CGTAGCTGGGAAGATAACG 6249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197755905868290