Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq593 131 1e-25 seq456 123 2e-23 seq420 120 2e-22 seq48 118 8e-22 seq1623 109 4e-19 seq13574 87.8 1e-12 seq79 87.8 1e-12 >seq593 Length=58250 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | || ||| | ||| ||||| || |||||||| ||||| || ||||| |||| | Sbjct 29603 CCTCCACGTAGACGAAGAACCAAATGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGAG 29544 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | |||||| || || || || | | ||||||||||| ||| Sbjct 29543 AGGGTGCGGCCATCCTCGAGTTGCTTTCCGGCGAAAATGAGTCTTTGTTGATCGGGTGGA 29484 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| || || ||| | || | |||||||| || ||| Sbjct 29483 ATTCCTTCCTTGTCTTGAATCTTGGTCTTAACATTGTCGATGGTGTCAGATCCCTCGACT 29424 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || ||||| || | || ||||||||||| ||||| Sbjct 29423 TCCAAAGTAATAGTCTTGCCAGTGAGGGTCTTTACAAATATTTGCAT 29377 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || || ||||| |||||||| ||||| || ||||| || | || || | | |||| || Sbjct 29357 ACCAAGTGAAGAGTAGATTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29298 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| || | ||| ||||||||||| || || ||||| || |||||| Sbjct 29297 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 29238 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || || ||| | || | |||||||| || ||||| || |||| || || Sbjct 29237 ATCTTGGTCTTGACATTGTCGATGGTGTCAGATCCCTCAACTTCCAGGGTGATGGTCTTT 29178 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || || || |||||||| || ||||| Sbjct 29177 CCAGTCAAGGTCTTTACAAAGATTTGCAT 29149 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 101261 ACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCC 101320 || |||||||| ||||| || ||||| || ||||| || | || || | | |||| || Sbjct 29129 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 29070 Query 101321 AATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGA 101380 | |||||| || ||||| || | ||| ||||||||||| ||||| ||||| || ||||| Sbjct 29069 AGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGAATTCCTTCCTTGTCTTGG 29010 Query 101381 ATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTG 101440 || || ||||| | || | |||||||| || || || | |||| || || Sbjct 29009 ATCTTGGTCTTTACGTTATCGATGGTGTCAGATCCCTCAACCTCCAAGGTGATGGTCTTA 28950 Query 101441 CCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || || | ||| |||||||| || ||||| Sbjct 28949 CCAGTAAGAGTCTTTACAAAGATTTGCAT 28921 Score = 102 bits (112), Expect = 6e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 101254 ACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGC 101313 ||| | ||| ||||| ||||| || || ||||| || ||||| |||| | ||| | | Sbjct 29820 ACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAAAGAGTACGACC 29761 Query 101314 ATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTT 101373 ||| || | |||||| || ||||| || | ||| ||||||||||| || || || || || Sbjct 29760 ATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCCTCCTT 29701 Query 101374 ATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGAC 101433 || || || || || ||| | || | |||||||| || || || | || | Sbjct 29700 GTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACCTCCAAGGTAAT 29641 Query 101434 CGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || ||||| || | ||| |||||||| || ||||| Sbjct 29640 AGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 >seq456 Length=67341 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| || || || ||||| || ||||| || |||||||| | Sbjct 21356 CCTCCACGAAGACGGAGAACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAA 21415 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | || ||||||||||| || ||||| |||||||| || |||||||| || Sbjct 21416 AGGGTACGACCGTCCTCCAATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGG 21475 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || || || || ||||| || || || ||| | || | |||||||| || || Sbjct 21476 ATTCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACC 21535 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 || || |||| || || || |||||||| || ||||| ||||||||| Sbjct 21536 TCGAGGGTGATGGTCTTTCCTGTTAAAGTCTTAACAAAGATCTGCATG 21583 >seq420 Length=40905 Score = 120 bits (132), Expect = 2e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | ||| || ||||| || || || ||||| || ||||| |||| Sbjct 13773 TTCCTCCACGGAGACGGAGAACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGG 13832 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | |||| || | |||||| || ||||| || | ||| ||||||||||| | Sbjct 13833 ATAGAGTGCGACCATCCTCGAGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTG 13892 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || |||||| | || | ||||| || ||| | Sbjct 13893 GGATTCCTTCCTTGTCTTGGATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGA 13952 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || || |||| || || || || ||||| || || || |||||||| Sbjct 13953 CCTCCAGTGTGATGGTCTTTCCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || || ||||| ||||| ||||||||||| ||||| || | Sbjct 13545 TTCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAG 13604 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 || || | | |||| || | |||||| || ||||| || | || ||||||||||| | Sbjct 13605 AGAGGGTGCGGCCATCCTCGAGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTG 13664 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 |||| || || ||||||||||| || || || | || | || ||||| || | Sbjct 13665 GAATACCCTCCTTATCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAA 13724 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | || | || | || ||||| || | ||| || || || |||||||| Sbjct 13725 CCTCCAAGGTAATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 Score = 100 bits (110), Expect = 2e-16 Identities = 174/253 (69%), Gaps = 5/253 (2%) Strand=Plus/Plus Query 101217 ATTTTTATTTAATATACTAGACATTTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAG 101276 |||| |||||| ||| | ||| |||| | | ||| | ||| |||||||| |||| Sbjct 13298 ATTTATATTTATTATTGTTGAC-----CTCCACGGAGACGGAGAACCAAATGAAGAGTAG 13352 Query 101277 ATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAA 101336 | ||||||||||| ||||| || | || || | | |||| || | |||||| || |||| Sbjct 13353 ACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCAAGTTGCTTGCCAGCAA 13412 Query 101337 ATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAA 101396 | || | || || || ||||| || || ||||| || ||||| || || || ||| Sbjct 13413 AGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACAT 13472 Query 101397 TTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTA 101456 | || | ||||| || || || || | || | || || || || | ||| || | Sbjct 13473 TGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTTCCAGTGAGAGTCTTGA 13532 Query 101457 CAAATATCTGCAT 101469 | || |||||||| Sbjct 13533 CGAAAATCTGCAT 13545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || || ||||| || || || ||||| || ||||| |||| Sbjct 14001 TTCCTCCACGGAGACGGAGTACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGG 14060 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | | || || | |||||| || ||||| || | | ||||||||||| | Sbjct 14061 AAAGGGTACGTCCGTCCTCTAGTTGCTTTCCAGCAAAGATGAGTCTTTGTTGATCGGGTG 14120 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || || || | || | ||||| || || | Sbjct 14121 GGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTGTCTGAGCCCTCGA 14180 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| |||| || ||||| || || || || ||||| || ||||| Sbjct 14181 CCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTGACAAAGATTTGCAT 14229 >seq48 Length=44992 Score = 118 bits (130), Expect = 8e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | || || ||||| ||||| || |||||||| ||||| |||| Sbjct 22176 TTCCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGTATGTTGTAGTCGG 22117 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | ||| | | |||| || | |||||| || || || || | ||| ||||||||||| | Sbjct 22116 ATAGAGTGCGGCCATCCTCGAGTTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTG 22057 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || || || | || | || ||||| || | Sbjct 22056 GGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCGA 21997 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 | ||||| |||| || ||||| || || || ||||| || || |||||| Sbjct 21996 CCTCAAGTGTGATGGTCTTGCCAGTCAATGTCTTTACGAAAATTTGCATG 21947 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 101241 TTCCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGG 101300 ||||||| | | ||| | ||| |||||||| ||||| || ||||| || ||||| |||| Sbjct 22632 TTCCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGG 22573 Query 101301 CGATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCG 101360 | || | |||| || | ||||| || ||||| || | | ||||||||||| | Sbjct 22572 ACAATGTGCGACCATCCTCGAGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTG 22513 Query 101361 GAATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCA 101420 | || ||||| || ||||| || || || ||| | || | ||||| || || | Sbjct 22512 GGATTCCTTCCTTGTCTTGGATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGA 22453 Query 101421 CTTCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATG 101470 |||| | |||| || ||||| || | ||| || || || ||||||||| Sbjct 22452 CTTCCAAGGTGATAGTCTTGCCAGTGAGAGTCTTGACGAAAATCTGCATG 22403 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || ||||| ||||| || ||||| || ||||| || | | Sbjct 22858 CCTCCACGGAGACGGAGTACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAG 22799 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| || | ||||| || || || || | ||| ||||||||||| || Sbjct 22798 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGG 22739 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || |||||||| || || || | || | || ||||| || || Sbjct 22738 ATTCCTTCCTTGTCTTGAATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACC 22679 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCAT 101469 || | ||| | || ||||| || | ||| ||||| || |||||||| Sbjct 22678 TCCAAAGTAATAGTCTTGCCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 >seq1623 Length=5066 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | ||| |||||||| ||||| || ||||| || ||||| |||| Sbjct 102 CCTCCACGGAGACGGAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCGGAA 161 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | ||| | |||| || | |||||| || ||||| || | ||| ||||||||||| || Sbjct 162 AGAGTACGACCATCCTCAAGTTGCTTTCCGGCAAAGATAAGACGTTGTTGATCGGGGGGG 221 Query 101363 ATGCCTTCTTTATCTTGAATTTTTTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACT 101422 || ||||| || ||||| || || ||||| | || | || ||||| || || Sbjct 222 ATTCCTTCCTTGTCTTGGATCTTGGTCTTTACGTTCTCGATGGTATCAGAGCCCTCAACC 281 Query 101423 TCAAGAGTGACCGTTTTGCCGGTTAAAGTTTTTACAAATATCTGCATGGT 101472 || | |||| || || || || | ||||| ||||| || ||||| || Sbjct 282 TCCAAGGTGATGGTCTTACCAGTCAGGGTTTTAACAAAGATTTGCATAGT 331 >seq13574 Length=204 Score = 87.8 bits (96), Expect = 1e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 ||||||||||| || | ||| |||||||| || ||||| |||||||| ||||||||||| Sbjct 88 TTACCTGCAAAAATAAGACGTTGTTGATCTGGTGGAATTCCTTCTTTGTCTTGAATTTTG 29 Query 101387 TGTTTTACAATTTCTACAGTGTCAGA 101412 ||| ||| |||| | ||||||||| Sbjct 28 GCTTTAACATTTTCAATAGTGTCAGA 3 >seq79 Length=127859 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 101243 CCTCCTCTTAAACGTAAAACTAAATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCG 101302 ||||| | | ||| | || || || || ||||| || ||||| || |||||||| | Sbjct 118848 CCTCCACGGAGACGGAGGACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAA 118789 Query 101303 ATAGTTCTGGCATCGTCCAATTGCTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGA 101362 | || | | |||| ||||||||||| || || || |||||||| || |||||||| || Sbjct 118788 AGGGTGCGGCCATCCTCCAATTGCTTGCCGGCGAAGATCAAACGTTGCTGATCGGGGGGG 118729 Query 101363 ATGCCTTCTTTATCTTGAATTTT 101385 || || || || ||||| || || Sbjct 118728 ATTCCCTCCTTGTCTTGGATCTT 118706 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396210760849785