Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018846.1 Length=60894 Score E Sequences producing significant alignments: (Bits) Value seq816 682 0.0 seq400 360 7e-95 seq1667 131 7e-26 seq334 127 8e-25 >seq816 Length=14434 Score = 682 bits (756), Expect = 0.0 Identities = 559/677 (83%), Gaps = 2/677 (0%) Strand=Plus/Minus Query 9755 CCATTGTTCTCCAAATACAAAACCAATTTCCGCCAGTGCTTCGTCCATTTTGTCGATGAA 9814 |||||| || |||||||||||||||||||| |||||||| ||||||||||| |||||||| Sbjct 9241 CCATTGCTCCCCAAATACAAAACCAATTTCAGCCAGTGCCTCGTCCATTTTTTCGATGAA 9182 Query 9815 CTCCGGCACCATCTCATCAAAACTCGCCATGTACTTTTCATCCCGCTCGACCACGACATA 9874 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 9181 CTCCGGCACCATCTCGTCAAAACTCGCCATGTAATTTTCATCCCGCTCAACCACGACATA 9122 Query 9875 ATGCAGGCCTTCACGCTTCATGCGTGGGTCGTAGTTGGCGAAGTACCAGGCGTCCTTGTC 9934 ||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || Sbjct 9121 ATGCAGGCCTTCACGCTTCATTCGTGGGTCATAGTTGGCAAAGTACCAGGCATCTTTTCG 9062 Query 9935 TGTAACCCACATGCTGAATTGCACCTGGGCCATGTAAGCAGGCTTGATAGCGTCAAAGCC 9994 || |||||||||||| | |||||||||||||||||||| | ||| || || || || || Sbjct 9061 CGTCACCCACATGCTGTACTGCACCTGGGCCATGTAAGCCGACTTTATGGCCTCGAAACC 9002 Query 9995 GCCAAGCCGGAATTTCATGAAGTCGCGGGAAGTAAAAGGGCATTTAAGCTCAAGACCGTT 10054 || ||||||||||||||||| || ||||| ||||| |||||||| || ||||| ||||| Sbjct 9001 ACCGAGCCGGAATTTCATGAAATCCCGGGAGGTAAACGGGCATTTCAGTTCAAGGCCGTT 8942 Query 10055 ACCGTCGCTGCATAAACCGTCGGGAGAGCAGGCGGTGCGCATGCTTTCGTCACGAAAAAT 10114 ||||| ||||||||||| ||||||||||||||||||||||| |||||||| ||| | || Sbjct 8941 GCCGTCACTGCATAAACCATCGGGAGAGCAGGCGGTGCGCATACTTTCGTCGCGATAGAT 8882 Query 10115 TATTGGCGTTTCCGAGACGGTAACATCCGCGATAAATTCGAAGAGGGCACGGGCATCATC 10174 || || | ||| | || | || | | |||| || || ||||| | ||| || | Sbjct 8881 GATCGGGGATTCAGTAACATTCACGCCGGAAGTAAACTCAAACAGGGCTCTGGCGTCGTT 8822 Query 10175 TTCGTATTGCTTTCCCCATGCGAGCGACTTAGCGTTAACTTCCGGTGCCACGCCAGTACA 10234 ||||| || |||||||| || |||| |||||| ||||||||||| ||||| || || || Sbjct 8821 CTCGTACTGTTTTCCCCAGGCCAGCGCCTTAGCATTAACTTCCGGAGCCACACCGGTGCA 8762 Query 10235 AACTTCAGCCAGCAGGGTGTGGAAGTATGACATTTTTGTATCAGGCCATTTGCTGCCGGA 10294 ||| ||||||||||||||||||||||| |||||||| | |||||||| || | || || Sbjct 8761 AACCTCAGCCAGCAGGGTGTGGAAGTAGGACATTTTCATGTCAGGCCACTTCTTTCCTGA 8702 Query 10295 ACGTGGCTTTGCTATCACATTGTGAACTTCTGAAGCAGTGATAACACCGAGTCTCAGCTT 10354 || |||||||||||||| ||||||||||||||||| ||||| || ||||| | | || Sbjct 8701 GCGGGGCTTTGCTATCACGTTGTGAACTTCTGAAGCGGTGATGACGCCGAGCCGTAATTT 8642 Query 10355 GTGCCATCCATCATCGCCCTGGTCGA-GGCTGGTAATATCCACGCCAGTTCGCTGGAGAA 10413 ||||||| ||||||| ||||| |||| ||| | | || | || || ||||| || | Sbjct 8641 GTGCCATGCATCATCCCCCTGTTCGACAGCT-CTCACGTCGATCCCGGTACGCTGCAGGA 8583 Query 10414 TAATTTCTGGTGTCATG 10430 |||| || ||||||||| Sbjct 8582 TAATGTCCGGTGTCATG 8566 >seq400 Length=38681 Score = 360 bits (398), Expect = 7e-95 Identities = 396/524 (76%), Gaps = 5/524 (1%) Strand=Plus/Plus Query 2994 CGCATTGGTTACCCCATACATCAAATCCATGCGAGGTGTGGCGGGCGAACAGTTCTATCC 3053 |||| ||||| ||||| || ||||| |||||||| | ||||||||||| || || || | Sbjct 35303 CGCACTGGTTTCCCCAAACGTCAAACCCATGCGACGACTGGCGGGCGAATAGCTCGATGC 35362 Query 3054 GGGGAACATCGCCAAGAAGTTGCACAAGCTTTTCTCGAGCCATATCCGGCTTGCGGGAGT 3113 | || ||||||||||| | ||||| ||||| |||| || ||||||||||| |||| Sbjct 35363 GCGGCACATCGCCAAGCAACTGCACCAGCTTCTCTCTGATCACGTCCGGCTTGCGCGAGT 35422 Query 3114 GATCAAGGCGCGGTGCAGTGA-ATGACTGGATTATTCCGGCGTTAATGCGTTCGGGCAGA 3172 || |||||||| || |||| ||| |||| || |||| ||||| | ||||| Sbjct 35423 TCTCCAGGCGCGGCGCCGTGACATG-CTGGCAGATCGAAGCGTCCATGCGCGCCGGCAGT 35481 Query 3173 TTTCCTTTCACTGCAAAAAGGCAGTCTTCGCTGTTAGCGCGAGTGGTGCTACCCATACCC 3232 || || ||| ||||| || |||||||||||||| || || || || ||||| || Sbjct 35482 TTCCCGCGCACCGCAAACAGACAGTCTTCGCTGTTCGCCCGGGTCATGTGTCCCATGCCG 35541 Query 3233 ATGACCAGCTTGTCGGTCTGTCTTTTCCCGCATTTGTTCCAGGTTAATCCTTTCATCGTC 3292 ||| | ||| | | || | ||| ||||| |||||| ||||| ||||||||| Sbjct 35542 ATGGCGCTGTTGCCTTTGTGCTTATTCGT---TTTGTGCCAGGTGAATCCCTTCATCGTC 35598 Query 3293 ACCAGACGAAAGCCCCACGCTTCTACAACCTTCAATGCTTCAAGTGGTTGTGTAGGCACC 3352 | ||| ||||| ||||||||||| | ||||||||| ||||||| || ||||| || ||| Sbjct 35599 ATCAGGCGAAATCCCCACGCTTCGATAACCTTCAACGCTTCAATCGGCTGTGTTGGAACC 35658 Query 3353 CACCACATAGACAACAGGCAATTATCGGCTGCCAGTTCCCATACCGGGAGGCGGCAGATA 3412 |||||||||| || |||||||| ||||| ||||| ||||| || || ||||||||||| Sbjct 35659 CACCACATAGCCAGCAGGCAATCTTCGGCAGCCAGATCCCACACAGGCAGGCGGCAGATG 35718 Query 3413 TCCAGAAGACTCATGACCGGATATTTAAAACTTGCACCGCGTTGACCATCGGTTGCTTTG 3472 ||||| | |||| |||||||| || || | || ||||| | || |||| ||||||| Sbjct 35719 TCCAGCACGTTCATAACCGGATACTTGAAGCCGGCGCCGCGCTCGCCGTCGGCTGCTTTG 35778 Query 3473 TCGCGGAATGTCCAGGGGGGATCTGCGTAAATGAGGGTGTATTT 3516 || ||| || ||| || || |||||||||||||| |||||||| Sbjct 35779 TCACGGTATACCCAAGGCGGGTCTGCGTAAATGAGAGTGTATTT 35822 >seq1667 Length=2119 Score = 131 bits (144), Expect = 7e-26 Identities = 166/227 (73%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 28267 GAGGCGGGGT-ATGAACCAGATGGAAAAAATCACAACAGGTGTGTCATACACCACGTCAG 28325 |||| ||||| ||||| ||||| || | ||||| ||||| | || ||| |||| Sbjct 1865 GAGGTGGGGTTATGAAATCCATGGATAAGTTAACAACGGGTGTCGCCTATGGCACCTCAG 1924 Query 28326 CGGTGGGAACGGGCTACTGGTTCCTGCAGTTGCTGGACAGGGTTTCCCCGTCTCAGTGGG 28385 | | | | || |||||||| | ||| |||| || | || | || || ||||||| Sbjct 1925 CAGGTAGTGCCGGTTACTGGTTTTTACAGCTGCTCGATAAAGTCACGCCCTCACAGTGGG 1984 Query 28386 CGGCAATAGGCGTGCTGGGGAGTCTGCTGTTTGGTCTGCTGACGTACCTGACGAACCTGT 28445 | |||||||| |||||||| || ||| | ||||| ||||||||||||||||| ||||| | Sbjct 1985 CAGCAATAGGTGTGCTGGGTAGCCTGGTATTTGGCCTGCTGACGTACCTGACAAACCTTT 2044 Query 28446 ATTTCAAAATCAGAGAGGACAGGCGTAAGGCGGCACGGGGAGAGTAA 28492 ||||||| || | ||| || | ||| ||||| || | || || ||| Sbjct 2045 ATTTCAAGATTAAAGAAGATAAGCGCAAGGCTGCGAGAGGTGAATAA 2091 >seq334 Length=953 Score = 127 bits (140), Expect = 8e-25 Identities = 140/179 (78%), Gaps = 13/179 (7%) Strand=Plus/Minus Query 31225 TGCGCCGTATCGTCGCCGTATTCCCGCATTAACAGAGACTGCAGCC--ACC-----TTA- 31276 ||||| ||||||||||||||||||||||||||| ||| | |||| || || Sbjct 448 TGCGCTGTATCGTCGCCGTATTCCCGCATTAACCATGACCGTAGCCCGACGGGGAATTCC 389 Query 31277 -TCTGCGTGAGTGTGCGGGGATAATCAAAAACGATGCACACCGGGTTTTCTCATTTTTCA 31335 |||||||||||||||||| ||||||||||||||||||||||||||||| | | | | Sbjct 388 TTCTGCGTGAGTGTGCGGGAATAATCAAAAACGATGCACACCGGGTTTT-ACTGTGCTGA 330 Query 31336 CGAGATGGGAGCGATTTCCCGCGAAGCCGCCTGTCCGGTGCGGTGGTGGAAGAAACCGG 31394 | ||| | || | || ||| | || ||| | ||||||||| |||||||||||||||| Sbjct 329 C-AGA-CGCAG-GGTTACCCTCATAGTCGCTTTTCCGGTGCGATGGTGGAAGAAACCGG 274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 194706813045360