Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018848.1 Length=37612 Score E Sequences producing significant alignments: (Bits) Value seq1862 109 1e-19 >seq1862 Length=5913 Score = 109 bits (120), Expect = 1e-19 Identities = 248/365 (68%), Gaps = 11/365 (3%) Strand=Plus/Plus Query 30169 ATGGCCGGAGACACCCCGATCACCGTTGTGGGCAACGTCGTTGCCGACCCCGAACTCAGG 30228 ||||| || |||||| |||||||| | || ||| | || || || ||||| | Sbjct 5186 ATGGCTGGCGACACCATCATCACCGTCATCGGAAACCTGACGGCTGATCCTGAACTTCGT 5245 Query 30229 TTCACCCCCGCCGGCGCCGCCGTCGCGAACTTCCGGCTCGCCTCGACCCCCCGCACGTTC 30288 |||||||| || || ||||| || || |||||| | | || || || ||||| || ||| Sbjct 5246 TTCACCCCGGCGGGTGCCGCGGTTGCAAACTTCACGGTTGCTTCCACGCCCCGTACCTTC 5305 Query 30289 GACCGCACCGCCAACGAATGGCGAGACGGCGAGACCCTGTTCCTGTCCGTCTC--CGTAT 30346 ||||| | |||| |||||| ||||||||| | |||||| || ||| | | | | Sbjct 5306 GACCGTAATTCCAATGAATGGAAAGACGGCGATGCGCTGTTCATG--CGTTGCAACATCT 5363 Query 30347 GGCGCCA-GCAGGCCGAGAACGTCGCCGGATCCATCCACCGCGGCGACCGCGTGATCGTC 30405 ||||| | |||| ||||||||||||| | | | ||| || || || ||||| Sbjct 5364 GGCGCGAAGCAG-CCGAGAACGTCGCGGAGAGCTTGACCCGTGGTTCACGAGTAATCGTG 5422 Query 30406 GTCGGCACCCTCGCCCAGCGCACGTACGAGA---AGGACGGCGAGCGCCGAGC-GTCCTA 30461 |||| ||| ||||| ||||||| | || ||||| ||| | ||| | Sbjct 5423 AGCGGCCGGCTCAAGCAGCGTTCGTACGAAACTCGCGAGGGCGAAAAGCGAACTGTCGT- 5481 Query 30462 CGAGGTCAAGGCCGAGGAAGTCGGCCCCGCGCTCAAGAACGCGACCGCCACTGTCACCAA 30521 |||| || | | ||| ||| |||| || | || ||| |||| || || | |||| ||| Sbjct 5482 CGAGCTCGAAGTCGATGAAATCGGTCCTTCACTGAAGTACGCCACGGCAAAGGTCAACAA 5541 Query 30522 GGCCA 30526 ||||| Sbjct 5542 GGCCA 5546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 120216803492940