Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq420 111 1e-19 seq48 111 1e-19 seq593 104 2e-17 seq456 102 6e-17 >seq420 Length=40905 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||| |||||||| ||||| || |||||| | ||| | || || Sbjct 13793 ACCAAGTGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGATAGAGTGCGACCATCCTCG 13852 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| || || || |||||||| | || | || |||||||| Sbjct 13853 AGTTGCTTGCCGGCAAAGATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 13912 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | ||||| | || ||||||| || || || ||| Sbjct 13913 ATCTTGGTCTTTACATTGTCGATGGTGTCTGATCCTTCGACCTCCAGTGTGATGGTCTTT 13972 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||||||| || || ||||||||||| Sbjct 13973 CCAGTCAAAGTCTTGACGAAAATCTGCAT 14001 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||||||||| || ||||| ||||| || | || | || || Sbjct 13337 ACCAAATGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCA 13396 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| || ||||| || ||||| || || || | || | || |||||||| Sbjct 13397 AGTTGCTTGCCAGCAAAGATTAGTCGTTGCTGGTCGGGTGGGATTCCTTCCTTGTCTTGG 13456 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | ||||| |||| ||||||| ||||| || ||| Sbjct 13457 ATCTTGGTCTTGACATTGTCGATGGTGTCTGATCCCTCAACCTCCAAGGTAATGGTCTTT 13516 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || ||||||||||| Sbjct 13517 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13545 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||||||||| || ||||| ||||| || | || | || || Sbjct 13565 ACCAAGTGAAGAGTAGACTCTTTTTGTATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 13624 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| || || || |||||||| | |||| |||||||| || | Sbjct 13625 AGTTGCTTGCCGGCAAAGATAAGGCGTTGTTGATCGGGTGGAATACCCTCCTTATCTTGA 13684 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || |||| ||||||| ||||| || || Sbjct 13685 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAGGTAATAGTCTTG 13744 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || ||||||||||| Sbjct 13745 CCAGTGAGAGTCTTGACGAAAATCTGCAT 13773 >seq48 Length=44992 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| |||||||| || || || |||||| | || |||| || Sbjct 22384 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTATAGTCGGATAGAGTGCGGCCGTCCTCG 22325 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| || || || || ||||| | |||| |||||||||||| | Sbjct 22324 AGTTGCTTTCCGGCAAAGATGAGACGTTGCTGATCGGGTGGAATGCCCTCCTTGTCTTGA 22265 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| |||||| | | | || || |||| ||||||| || || || ||| Sbjct 22264 ATCTTGGTCTTTACATTGTCGATGGTATCAGATCCCTCGACCTCCAGTGTGATGGTCTTT 22205 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||| || || ||||| |||||||| Sbjct 22204 CCAGTCAATGTCTTGACAAAGATCTGCAT 22176 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||||||| || || ||| |||||||| ||||| || || | | ||| | || || Sbjct 22612 ACCAAATGAAGAGTAGACTCCTTTTGAATGTTGTAGTCGGACAATGTGCGACCATCCTCG 22553 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| || |||| |||||||| | || | || |||||||| Sbjct 22552 AGCTGCTTGCCGGCAAAGATGAGTCTTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGG 22493 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | | ||||| |||| || |||| || || || || Sbjct 22492 ATCTTGGTCTTGACATTATCGATGGTGTCTGAGCCCTCGACTTCCAAGGTGATAGTCTTG 22433 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| || || ||||||||||| Sbjct 22432 CCAGTGAGAGTCTTGACGAAAATCTGCAT 22404 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| |||||||| ||||| ||||| || | || | || || Sbjct 22840 ACCAAGTGAAGAGTAGACTCCTTTTGAATGTTGTAGTCAGAGAGGGTGCGGCCATCCTCG 22781 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| || || || || || || |||||||| | || | || |||||||| | Sbjct 22780 AGCTGCTTGCCAGCGAAAATGAGACGTTGTTGATCGGGTGGGATTCCTTCCTTGTCTTGA 22721 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | | || || |||| ||||||| ||||| || || Sbjct 22720 ATCTTGGTCTTGACGTTGTCGATGGTATCAGATCCCTCAACCTCCAAAGTAATAGTCTTG 22661 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || | ||| ||||| ||||||||||| Sbjct 22660 CCAGTGAGAGTCTTTACGAAAATCTGCAT 22632 >seq593 Length=58250 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 ||||| | || || | |||||||| || || ||| |||||||| ||||| || || Sbjct 29831 CCGCCACGGAGACGGAGAACCAAATGGAGGGTTGACTCCTTTTGAATGTTGTAGTCGGAA 29772 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 ||| | ||| | || || | ||||| |||||||| || || || |||||||| | || Sbjct 29771 AGAGTACGACCATCCTCGAGTTGCTTTCCGGCAAAGATGAGACGTTGTTGATCGGGTGGG 29712 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | ||||||||||| ||||| || ||| | | | | || || |||| ||| Sbjct 29711 ATTCCCTCCTTGTCCTGGATCTTGGTCTTGACATTATCGATGGTGTCAGAGCCCTCGACC 29652 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||| ||||| || || || || | ||| |||||||| || ||||| Sbjct 29651 TCCAAGGTAATAGTCTTGCCAGTAAGAGTCTTTACAAAGATTTGCAT 29605 >seq456 Length=67341 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || ||| ||||| || |||||||| || || | ||| |||| ||| Sbjct 21374 ACCAAGTGGAGAGTAGACTCCTTTTGGATGTTGTAATCCGAAAGGGTACGACCGTCCTCC 21433 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || ||||| |||||||| |||| || || ||||| | ||| | ||||||||||| Sbjct 21434 AATTGCTTTCCGGCAAAGATCAAACGTTGCTGATCGGGGGGGATTCCCTCCTTGTCTTGG 21493 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || |||| ||||| | || || || ||| Sbjct 21494 ATCTTGGCCTTGACATTCTCAATGGTGTCAGATCCCTCAACCTCGAGGGTGATGGTCTTT 21553 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| || ||||| |||||||| Sbjct 21554 CCTGTTAAAGTCTTAACAAAGATCTGCAT 21582 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380872579308615