Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019401.1 Length=358663 Score E Sequences producing significant alignments: (Bits) Value seq362 107 4e-18 seq217 107 4e-18 seq3 105 2e-17 seq165 89.7 1e-12 >seq362 Length=339261 Score = 107 bits (118), Expect = 4e-18 Identities = 288/436 (66%), Gaps = 16/436 (4%) Strand=Plus/Minus Query 150359 ATTCAGATTCTTTCTCGTAAAACCAAAAAGAATGGTGCGTTAGTTGGTGAACCAGGTGTT 150418 || ||||| || ||||| | ||||||||| ||| | ||| |||| ||||| || || Sbjct 195781 ATCCAGATCCTGTCTCGCAGAACCAAAAACAATCCTATTTTAATTGGGGAACCCGGAGTA 195722 Query 150419 GGTAAAACACAAATCGTTGACGGATTAGCACAACGCATCGCTAATGGTGATGTTCC--AG 150476 ||||||||| || | || ||| | || | ||| ||| || ||||| || || Sbjct 195721 GGTAAAACAGCTATTGCCGAGGGAATTGCTTTCAGGATCATTAAAGGCGATGTACCGGAG 195662 Query 150477 ATTCTATGAAAGATGTTGAAATTCTTTCTT---TGAATATGGGTGCATTTACTGCTGGTA 150533 | ||| | |||| | ||| | ||| || || | |||||||| | | ||| ||| Sbjct 195661 AATCT-TAAAAG----TAAAACTGTTTATTCCCTGGACATGGGTGCTCTCATTGCGGGTG 195607 Query 150534 CTAAGTATCGTGGTGAATTCGAAGAACGTGTAGACAATTTGCTACAAGAACTAAAAGAAC 150593 | || || |||||||| || ||| | || | | | ||||| | | || Sbjct 195606 CGAAATACAAAGGTGAATTTGAGGAAAGATTAAAAGCCGTCGTTAAAGAAGTCAGCCAAA 195547 Query 150594 GCGATG---ATGTTATTCTGTTCATCGATGAAATCCATACTATTATGGGTGCTGGTGCGA 150650 |||||| || ||||| |||| || ||||| || ||||| || | |||||||||| Sbjct 195546 GCGATGGAGATATTATTTTGTTTATTGATGAGATTCATACCCTTGTTGGTGCTGGTGGC- 195488 Query 150651 CTGGCGGCGGTTCTTTGGATATGAGCAATATGTTAAAACCTGCTCTATCTCGCGGTGAAA 150710 || | ||| | ||||| ||||| ||||||||||| || | | || ||| Sbjct 195487 --GGTGAAGGTGCAATGGATGCCGCAAATATTTTAAAACCTGCACTGGCCAGAGGAGAAC 195430 Query 150711 TTCGTGTCATCGGTGCAACAACCTACGATGAATATCGTAAACACATTGAAAAAGATGCAG 150770 | | | || || || ||||| |||||||||| ||| | ||||||||||| || Sbjct 195429 TGAGGGCTATTGGGGCGACAACACTGGATGAATATCAGAAATATCTTGAAAAAGATAAAG 195370 Query 150771 CACTACAGCGTCGTTT 150786 | || |||||||||| Sbjct 195369 CCCTGGAGCGTCGTTT 195354 >seq217 Length=468 Score = 107 bits (118), Expect = 4e-18 Identities = 70/77 (91%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324512 TATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCG 324571 |||||||| ||||||||| |||||||||| |||||||||||| || |||||||||||||| Sbjct 318 TATGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTCG 377 Query 324572 AACCCGTTTAGCTCCAC 324588 | ||||||| ||||||| Sbjct 378 ATCCCGTTTGGCTCCAC 394 >seq3 Length=3814 Score = 105 bits (116), Expect = 2e-17 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 324511 ATATGGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTC 324570 ||| ||||| ||||||||| |||||||||| |||||||||||| || ||||||||||||| Sbjct 296 ATACGGGGCCATAGCTCAGCTGGGAGAGCGCCTGCCTTGCACGCAGGAGGTCAACGGTTC 355 Query 324571 GAACCCGTTTAGCTCCAC 324588 || ||||||| ||||||| Sbjct 356 GATCCCGTTTGGCTCCAC 373 >seq165 Length=230050 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 139650 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 139709 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 139710 CCGTTTAGCTCCACCAA 139726 Score = 89.7 bits (98), Expect = 1e-12 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 324515 GGGGCTATAGCTCAGTTGGGAGAGCGTCTGCCTTGCACGTAGAAGGTCAACGGTTCGAAC 324574 ||||||||||||||| |||||||||| ||| | ||| | | ||||||||||||||| | Sbjct 139931 GGGGCTATAGCTCAGCTGGGAGAGCGCTTGCATGGCATGCAAGAGGTCAACGGTTCGATC 139990 Query 324575 CCGTTTAGCTCCACAAA 324591 |||||||||||||| || Sbjct 139991 CCGTTTAGCTCCACCAA 140007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1147384477454490