Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019405.1 Length=215710 Score E Sequences producing significant alignments: (Bits) Value seq582 385 7e-102 seq5362 96.9 5e-15 >seq582 Length=79996 Score = 385 bits (426), Expect = 7e-102 Identities = 530/737 (72%), Gaps = 8/737 (1%) Strand=Plus/Minus Query 136646 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 136705 ||||||| | ||||| ||| || | ||| || || | ||||| ||||| |||| Sbjct 75650 AGCCCTTGATGCAGACGACCTGGCGCAAGGTATGCACCACTTCCACCAGGTCGCCCTGGT 75591 Query 136706 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 136765 | |||||||||||||||||| || ||||| |||||||||||||||||||| | | Sbjct 75590 GCGCCATGACCGCGTCGATGTTTTTATAGGCGGCAGGGATTTCGTCGATCACGCCGCCAT 75531 Query 136766 CCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCC 136824 ||||||||||||| | ||| | || || | | | || || ||||| | ||| Sbjct 75530 CCTTGCGGCACTCGATGCCGGCCGTCTGCTCGGCCAGTTCGAAGCGGTTGAAGCGGCGC- 75472 Query 136825 TTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCC 136884 || |||| | | || ||| | || ||||| ||||||||||| ||||||||||| ||| Sbjct 75471 TTCGCCTCGCTGCGGCTCATGCTGCGCCCCGCCCCGTGCGAGCAGGAGCAGAACGATTCC 75412 Query 136885 GCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCG 136944 | ||||||||||| ||||||||| || || ||||| |||||||||||| || Sbjct 75411 GGCTTGCCCTTGCCACGCACGATGAAGCTGCGCGCGCCCATGCTGCCGGGGATGATGCCC 75352 Query 136945 AACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAG 137004 | || ||| | ||||||| | ||||||||||| ||||| | | |||| | | Sbjct 75351 AGCTCCCCCTGCCGCGCCGAGATGGCGCCCTTGCGCGTCACATATAAATCATCGTTGCCG 75292 Query 137005 TGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAC 137064 || ||| | || |||||||||||||||||| | |||||| ||| | |||| Sbjct 75291 TGCGTTTCGCGCGCGATGTAGTTGTGGTGGCAGTTGATGGCTTCCCCGTCGAGCCGGAAC 75232 Query 137065 GGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 137124 |||||| | | |||| ||| | || || || ||| ||||||| |||||||| Sbjct 75231 GGCGGCGCGAACTTCGCCAGCACG---TCGAGCACGCGGCGCATCATCTCGCCGCGGTTG 75175 Query 137125 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCG 137184 | | ||||| | ||||| ||||| | || || ||||||||||||| |||| ||| | Sbjct 75174 AGCAGCGCGTAATCCTGCGCCCAGTCCACCGCCTCCACGTAGTCGTCGAACACCGCGGAG 75115 Query 137185 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGCAGCATC 137244 ||||||| || | || |||||| |||| || ||| || || || |||| | Sbjct 75114 CCTTCGCTCAGATACGCCAGGTCCGCGTCCGGCAGCTGCAGCTGGTGGCGCCGCATGTCC 75055 Query 137245 ATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCC 137304 ||| | ||| |||||||| || ||||||| |||||||| ||||||||||||| Sbjct 75054 TTCTGCGCGGCGG---CGATGAAGTAACGACCGATGGCGTTGCCGATGCCGCGCGAGCCC 74998 Query 137305 GAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTG 137364 || || ||||| ||||| |||||||| |||||||||||||||| || |||||||| ||| Sbjct 74997 GAATGCAGCATGACCCACACGCGCTGCTCCTCGTCGAGGCAGATTTCAATGAAGTGATTG 74938 Query 137365 CCGCCGCCCAGGGTGCC 137381 ||||| |||| |||||| Sbjct 74937 CCGCCCCCCAAGGTGCC 74921 Score = 87.8 bits (96), Expect = 2e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 137574 CAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCC 137633 |||| |||| || || || || |||| | | ||||| || || ||||||||||||| Sbjct 74728 CAGGTTGTCAGGCAGCTCGCCGGCCGTCAAGGTCGTGCGCACGGCGTTCATGCCGCAGCC 74669 Query 137634 GATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 137669 |||||||||||| |||||||||||||||| ||||| Sbjct 74668 GATGTCGACGCCCACGGCGGCCGGGATGACGGCGCC 74633 >seq5362 Length=3136 Score = 96.9 bits (106), Expect = 5e-15 Identities = 365/557 (66%), Gaps = 28/557 (5%) Strand=Plus/Plus Query 136848 CCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGAT 136907 ||| ||||||||||| | || || |||||| | | || ||||| ||| |||| Sbjct 17 CCGACCCGCGCCGTGGGGGCTGGACTTGAACGACGGCACGTTTCCCTTCCCGACGACGAC 76 Query 136908 GTAGGACTTG--GCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGAC 136965 ||| ||| | | ||||||||| |||||||||| |||| | | ||| | ||| Sbjct 77 GTA--ACTCGCCGTCCCCATCGAACCGGGGATGAGCCCGGGCGTGCCCTCGTTTGCCTTG 134 Query 136966 ACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAG 137025 | ||| ||||| ||| ||| | || | | | | | |||||| ||||||||| | || Sbjct 135 ATCGCACCCTTACGGCTCAGCCACACACCCCTGCCCATGTGGAACTCCTTCTGGGTGAAG 194 Query 137026 TTGTGGTGGCAGTTCA-CCGCTTCCTTGTCCGTC-TTGAACGGCGGCAGGCCCGACGCCC 137083 |||||||||||||| | ||||| | | |||| ||| || ||| | ||| | ||| Sbjct 195 TTGTGGTGGCAGTTGATCCGCT--CGACTTCGTCGATGATCGCGGGCTTG-CCGTCTCCC 251 Query 137084 -------GC---ATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCG 137133 || | | ||| || ||| ||| |||||||| |||||||||| | ||| Sbjct 252 ATGAAATGCGCGAAGTCCTTCACGACGCGGTCCATCATCTCTTCGCGGTTGAGCAAAGCG 311 Query 137134 AAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGG-CTCGCCTTCGCA 137192 |||| ||| ||||| || | | ||| || ||| || || || | ||| Sbjct 312 AAGTGCTGAGCCCAGTTGAGATCGGTGATGTACGAGTCGAATTCGGGTGTCTTC-TCGAC 370 Query 137193 GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGACGC-AGCATCATCTCCT 137251 || | ||||| ||| || | | ||| || | ||| ||| || |||| Sbjct 371 CAGGTAGGCAAGATCCGGATCGGGAAGGTTG---ATGTACCACCGCTCGCA-CAAGTCCT 426 Query 137252 TGGCCTTCTCGATGAAGATGCGGC-CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGG 137310 |||| ||| |||| ||||| || ||| |||| |||| ||||| |||||||| Sbjct 427 TGGCGATCTTGATG-TGATGCTGCGCGAGCTTGTTTCCGATACCGCGGCTTCCCGAGTGC 485 Query 137311 AGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 137370 || | || |||||||| | | || ||||| ||||||||||||||||| || | Sbjct 486 AGGAACAGCCAGACGCCGTCGCTTTCATCGAGTGTCACCTCGATGAAGTGGTTACCAGAG 545 Query 137371 CCCAGGGTGCCCAGTTG 137387 ||||| || || || || Sbjct 546 CCCAGCGTTCCGAGCTG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 690023181666000