Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq582 248 2e-60 seq1727 140 6e-28 seq1536 127 4e-24 seq714 125 1e-23 seq3293 116 7e-21 seq5912 98.7 2e-15 seq208 95.1 2e-14 seq813 84.2 4e-11 seq211 84.2 4e-11 >seq582 Length=79996 Score = 248 bits (274), Expect = 2e-60 Identities = 477/701 (68%), Gaps = 23/701 (3%) Strand=Plus/Minus Query 168312 TCCACCATTTCTTCCTGGGCCGCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTC 168371 ||||||| || ||||| ||||||||| ||||| || || || || | Sbjct 75609 TCCACCAGGTCGCCCTGGTGCGCCATGACCGCGTCGATGTTTTTATAGGCGGCAGGGATT 75550 Query 168372 TCGTCGATCACGCCTTCGTCCTTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCG 168431 |||||||||||||| | |||||||||||||||| ||| ||| ||| | | ||| Sbjct 75549 TCGTCGATCACGCCGCCATCCTTGCGGCACTCGATGCCGGCCGTCTGCTCGGCCAGTTCG 75490 Query 168432 TCCAGGGAGACGAGCTTCTTCGCCGCCGAACGCGACATGACGCGGCCGGCGCCGTGGCTG 168491 || || | | ||||||| | || |||| ||| || || ||||| | Sbjct 75489 AAGCGGTTGAAGCGGCGCTTCGCCTCGCTGCGGCTCATGCTGCGCCCCGCCCCGTGCGAG 75430 Query 168492 CACGAGCAGAAGGCGTCAGCGTGGCCCTTGCCGCGCACGATGAACGACTTGGCGCCCATC 168551 || |||||||| | || | | ||||||||| ||||||||||| |||||||| Sbjct 75429 CAGGAGCAGAACGATTCCGGCTTGCCCTTGCCACGCACGATGAAGCTGCGCGCGCCCATG 75370 Query 168552 GAACCCGGAATGATGCCGAGTTCGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACG 168611 || || |||||||| || || ||| | ||||||| | ||||||||||| ||||| Sbjct 75369 CTGCCGGGGATGATGCCCAGCTCCCCCTGCCGCGCCGAGATGGCGCCCTTGCGCGTCACA 75310 Query 168612 AAGATGTCCTCGCCGAAGTGGCGTTCCTTGTT-GACGTAGTTGTGGTGACAGTTCACCGC 168670 | | || ||| | ||| |||| | | || |||||||||||| ||||| | || Sbjct 75309 TATAAATCATCGTTGCCGTG-CGTTTCGCGCGCGATGTAGTTGTGGTGGCAGTTGATGGC 75251 Query 168671 TTCCTTGTCGGTCTTGAACGCCGGCACGAACTCCCGGATCGCCTTGAGCACGCGGACCAT 168730 |||| |||| | ||||| |||| |||||| | | | | | |||||||||| ||| Sbjct 75250 TTCCCCGTCGAGCCGGAACGGCGGCGCGAACTTCGCCAGCACGTCGAGCACGCGGCGCAT 75191 Query 168731 CATCATGTCGCGGTTCAGGCGCGCGAAGTCTTGCGCCCAGCCCACGGCTTCGATGTAGTC 168790 |||| | ||||||| || ||||| | || ||||||||| |||| || || | |||||| Sbjct 75190 CATCTCGCCGCGGTTGAGCAGCGCGTAATCCTGCGCCCAGTCCACCGCCTCCACGTAGTC 75131 Query 168791 GTCGAAATCCTGCTCGCCCACTTCG---AGCCACGCGAGGTTCTCGTCCTGCGGGCGCAC 168847 |||||| | | || ||||| || |||| |||| | ||||| || | ||| Sbjct 75130 GTCGAA---CACCGCGGAGCCTTCGCTCAGATACGCCAGGTCCGCGTCCGGCAGCTGCAG 75074 Query 168848 ATGGCGCTTTGCCAGGGCGTTCTTCGCCTTCTCGATGAAGTAGTTGCCGATCACGTTGCC 168907 ||| | || | | |||| ||| |||||||||| ||||| ||||||| Sbjct 75073 CTGGTGGCGCCGCATGTCCTTCTGCGCGGCGGCGATGAAGTAACGACCGATGGCGTTGCC 75014 Query 168908 GACGCCGCGCGATCCCGAGTGCAGCATCACCCACACGTTCGGGTCCGTCGTCCCCTGATC 168967 || ||||||||| ||||| |||||||| ||||||||| | | ||| ||||| Sbjct 75013 GATGCCGCGCGAGCCCGAATGCAGCATGACCCACACGCGCTGCTCC-TCGTC-------- 74963 Query 168968 GGTCTGGATGCAGATTTCGATGAAGTGGTTGCCGCCACCCA 169008 || ||||||||| |||||||| |||||||| |||| Sbjct 74962 ------GAGGCAGATTTCAATGAAGTGATTGCCGCCCCCCA 74928 Score = 107 bits (118), Expect = 3e-18 Identities = 140/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 169211 CGCCAAGTTGTCCGGCAGTTGCGAAGCAGTCAGCGTGGTGCGCACAGCCATCATGCCGCA 169270 ||||| |||||| ||||| | || |||| || |||||||| || |||||||||| Sbjct 74731 CGCCAGGTTGTCAGGCAGCTCGCCGGCCGTCAAGGTCGTGCGCACGGCGTTCATGCCGCA 74672 Query 169271 GCCGATGTCGACGCCGACCGCGTACGGGATCACCGCATCCTTGGTCGGGATCACCGAACC 169330 ||||||||||||||| || ||| |||||| || || | || || ||||| || Sbjct 74671 GCCGATGTCGACGCCCACGGCGGCCGGGATGACGGCGCCGCGCGTGGGAATCACGCTGCC 74612 Query 169331 AACGGCTGCGCCGTACCCGGCGTGGACGTCGGGCATCACCGCGACGTGCTTGAACACGAA 169390 |||| |||||| ||||| || ||||||||||| || | |||||| | |||| Sbjct 74611 GACGGTGGCGCCGATGCCGGCATGCACGTCGGGCATGGCCACCACGTGCGGATAAACGAT 74552 Query 169391 CGGCAGCCCGGCGA 169404 ||||| | ||||| Sbjct 74551 GGGCAGGCTGGCGA 74538 >seq1727 Length=33417 Score = 140 bits (154), Expect = 6e-28 Identities = 151/199 (76%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 171107 GACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACGGCGACGATGAT 171166 ||||| |||||||||||| ||| || |||| |||||||| || |||| || | |||| Sbjct 11187 GACCATGCCGAAGTTCTGGCGGCGCGCGTCGGCGTCGTGGATGGTGACGGTGATGCTGAT 11246 Query 171167 CTCGTCGA---CGGCCGGGTTCAGCAGGCTGGTGTCGATGGTGATGCGCTCATCATCGCC 171223 ||||| ||||||| || || | |||||| |||||||||||| ||||| Sbjct 11247 GCGGTCGATGTCGGCCGG---CACACGGGTCAGGTCGATTTCGATGCGCTCATCGTCGCC 11303 Query 171224 AGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTCGGCGGACTTCAG 171283 |||| ||||||||| |||||||||||| |||||||| | ||||||| |||||||| Sbjct 11304 CTCGCCTTCGCCGGTCTGGTTGTCGCCCGTGTGGACGACGGAACCGTCGGTCGACTTCAG 11363 Query 171284 GTTGCCGTAGAACACGAAG 171302 |||| |||||| | |||| Sbjct 11364 GTTGTTGTAGAAGATGAAG 11382 Score = 109 bits (120), Expect = 1e-18 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 171805 CGAACGGCCAGGGCGCCCACGCCGAGACCCACCATGATCCAGACGATGTTGCTCGTCAGT 171864 || ||| || |||||| | | | || |||| |||||| ||||| || | | || | Sbjct 11879 CGCACGAACATGGCGCCGATGGCCAGGCCCAGCATGATGATGACGACGTCGTTGGTGATG 11938 Query 171865 GCGAAGGCGCCGATGACGCCGTCAAACGAGAAGCTGGCGTCCAGGACTTCCAGGTAGATG 171924 |||||||||||||| ||||||||||| ||| ||||||||| ||||||||||| | | Sbjct 11939 GCGAAGGCGCCGATCACGCCGTCAAAGCTGAACGAGGCGTCCAGCACTTCCAGGTACAGG 11998 Query 171925 AAGCCGCCGATGCCGGCGCG 171944 ||||||||||||| | |||| Sbjct 11999 AAGCCGCCGATGCTGCCGCG 12018 >seq1536 Length=46536 Score = 127 bits (140), Expect = 4e-24 Identities = 148/196 (76%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 171095 GTAGGCGTTGCGGACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCAC 171154 |||||| |||| |||| ||||| ||||| ||||| || | || |||||||| || || Sbjct 21209 GTAGGCCTTGCCCACCATGCCGAAATTCTGCTTGCGCGCTTCCGCATCGTGGATGGTGAC 21150 Query 171155 GGCGACGATGATCTCGTCGA---CGGCCGGGTTCA-GCAGGCTGGTGTCGATGGTGATGC 171210 ||| ||| ||||| ||||| ||||||| || | ||| | |||||||| ||| Sbjct 21149 GGCAACGGCGATCTTGTCGATGTCGGCCGG---CACGTTGGCCAG-GTCGATGGCGATTT 21094 Query 171211 GCTCATCATCGCCAGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGT 171270 ||| || ||||| | ||| |||| || ||||||||||| ||||||||| | ||||| Sbjct 21093 TCTCGTCGTCGCCGTCACCGCCGCCCGTGGTGTTGTCGCCCGCGTGGACGATGGAGCCGT 21034 Query 171271 CGGCGGACTTCAGGTT 171286 |||| ||||||||||| Sbjct 21033 CGGCCGACTTCAGGTT 21018 >seq714 Length=37606 Score = 125 bits (138), Expect = 1e-23 Identities = 126/164 (77%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 172311 CATGTGCGCCGCGAAGGCGACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGC 172370 || || |||||| || ||||| | | ||| || | | ||||||||||| ||||| Sbjct 16271 CAGGTCCGCCGCTTGCGCCACGATGACCAGCGGAAACAGCAGACGCATGCCGAAGACGGC 16212 Query 172371 GATGATGATGCCGACGCCCAGGAAGAGCTTCTTCCACTTCTCGTCCCAATTCTGAAGAAC 172430 |||||||||||| ||||||||||| || |||| ||| || |||||| |||| || || Sbjct 16211 GATGATGATGCCCACGCCCAGGAACAGGTTCTGCCAGAACTTGTCCCAGTTCTTCAGCAC 16152 Query 172431 GTGGGCGTTGACGACGGCGTTGTCGAACGACAGCGAGATTTCCA 172474 |||||||| || |||||||||||||||||||| | ||||| Sbjct 16151 CGAAGCGTTGACCACCGCGTTGTCGAACGACAGCGACACTTCCA 16108 Score = 123 bits (136), Expect = 4e-23 Identities = 145/192 (76%), Gaps = 8/192 (4%) Strand=Plus/Minus Query 171108 ACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCACGGCGACGATGATC 171167 |||| || |||||||| ||||| || |||| ||||||||||||||| |||| |||| Sbjct 17553 ACCATGCCAAAGTTCTGCTTGCGCGCCTCGGCATCGTGGATCGTCACGCAGACGGCGATC 17494 Query 171168 TCGTCGA---CGGCCGGGTTCAGCA-GGCTGGTGTCGATGGTGATGCGCTCATCATCGCC 171223 | ||||| ||||||| || || ||| | ||||| | || | ||||| ||||| Sbjct 17493 TTGTCGATGTCGGCCGG---CACCATGGCCAG-GTCGACGACGACGGTTTCATCGTCGCC 17438 Query 171224 AGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTCGGCGGACTTCAG 171283 | ||||| |||| ||| |||||||||||||||| || | ||||||| |||||||| Sbjct 17437 ATCGCCGGCGCCCGTCTTGTTGTCGCCCGAGTGGGTGACGGAGCCGTCGCTCGACTTCAG 17378 Query 171284 GTTGCCGTAGAA 171295 |||| |||||| Sbjct 17377 GTTGTTGTAGAA 17366 >seq3293 Length=6246 Score = 116 bits (128), Expect = 7e-21 Identities = 124/160 (78%), Gaps = 8/160 (5%) Strand=Plus/Plus Query 172329 GACGATCAGGATCGGGAAGATGAAGCGCATGCCGAACACGGCGATGATGATGCCGACGCC 172388 |||||||| || ||||| | | ||||| ||||| ||||||||||||| ||||| | Sbjct 4479 GACGATCACGAGTGGGAACACCAGACGCATACCGAAGACGGCGATGATGACGCCGATGGT 4538 Query 172389 CAGGAAGAGCTTCTTCCAC--TTCTCGTCCCAATTCT--GAAGAACGTGGGCGTTGACGA 172444 ||||||| ||||| ||| ||| | || ||||| | ||||| |||||||| || Sbjct 4539 GAGGAAGATCTTCTGCCAGAATTCAC-TC---ATTCTTTGCAGAACAGTGGCGTTGATGA 4594 Query 172445 CGGCGTTGTCGAACGACAGCGAGATTTCCAGGATCGCCAG 172484 ||||||||||||| || |||||||||||||| |||| ||| Sbjct 4595 CGGCGTTGTCGAAGGAAAGCGAGATTTCCAGAATCGACAG 4634 >seq5912 Length=2652 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/210 (71%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 171095 GTAGGCGTTGCGGACCAGACCGAAGTTCTGGTTGCGGGCAGCGGCTTCGTGGATCGTCAC 171154 |||||||||| |||| | |||||| |||| || ||| |||| ||||| |||| || Sbjct 865 GTAGGCGTTGGTGACCTGTCCGAAGGACTGGAGTCGCGCATCGGCGTCGTGAATCGAGAC 806 Query 171155 GGCGACGATGATCTCGTCGACGGCCGG--GTTCAGCAGGCTGGTGTCGATGGTGATGCGC 171212 || || || ||| | | |||| || || |||| || ||| ||| | ||||| | Sbjct 805 GGGGAAGAAGATGTTGGTGACGTTGGGCGGTACAGCCGGGAGGT--CGACGTTGATGACC 748 Query 171213 TCATCATCGCCAGCGCCGTCGCCGGTCAGGTTGTCGCCCGAGTGGACGATCGCGCCGTCG 171272 || || ||||| | || || ||||| ||||||||||| | ||| |||| | |||||| Sbjct 747 TCGTCGTCGCCGTCACCTTCACCGGTGAGGTTGTCGCCGGTGTGCTCGATGGATCCGTCG 688 Query 171273 GCGGACTTCAGGTTGCCGTAGAACACGAAG 171302 | || |||||| |||||| |||||| Sbjct 687 GGCGAGCGAAGGTTGTTGTAGAAGACGAAG 658 >seq208 Length=140336 Score = 95.1 bits (104), Expect = 2e-14 Identities = 75/90 (83%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 132949 GCTCCAAGTTTGATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGG 133008 || ||| |||| |||||||||||||||| |||||||||| ||||||||||| |||| Sbjct 92197 GCCCCAGCTTTGTCGCGGGGTGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGG 92256 Query 133009 TCGAGGGTTCAAATCCCTCCCCCGCATCCA 133038 ||| ||||||||||| |||||||| ||| Sbjct 92257 TCGTCGGTTCAAATCCGGCCCCCGCAACCA 92286 >seq813 Length=65357 Score = 84.2 bits (92), Expect = 4e-11 Identities = 70/86 (81%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 132962 TGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCAAA 133021 ||||||||||||||||| || ||||||| ||||||||||| |||||| |||||||| Sbjct 63860 TGCGGGGTGGAGCAGTCTGGCAGCTCGTCGGGCTCATAACCCGAAGGTCACAGGTTCAAA 63919 Query 133022 TCCCTCCCCCGCATCCACAAGCTGAA 133047 ||| ||||||| ||| | ||||| Sbjct 63920 TCCTGTCCCCGCAACCAATACCTGAA 63945 >seq211 Length=76543 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||| |||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 53949 GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCA 53890 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| | |||||| ||| Sbjct 53889 AATCCGGCTCCCGCAACCA 53871 Score = 84.2 bits (92), Expect = 4e-11 Identities = 66/79 (84%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 132960 GATGCGGGGTGGAGCAGTCCGGTAGCTCGTTTGGCTCATAACCAAAAGGTCGAGGGTTCA 133019 || ||||| |||||||||| |||||||||| ||||||||||| ||||||| |||||| Sbjct 54232 GACGCGGGATGGAGCAGTCTGGTAGCTCGTCGGGCTCATAACCCGAAGGTCGTCGGTTCA 54173 Query 133020 AATCCCTCCCCCGCATCCA 133038 ||||| | |||||| ||| Sbjct 54172 AATCCGGCTCCCGCAACCA 54154 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895609584894600