Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019407.1 Length=218929 Score E Sequences producing significant alignments: (Bits) Value seq582 390 2e-103 seq5362 102 1e-16 >seq582 Length=79996 Score = 390 bits (432), Expect = 2e-103 Identities = 531/737 (72%), Gaps = 8/737 (1%) Strand=Plus/Minus Query 135406 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 135465 ||||||| | ||||| ||| || | ||| || || | ||||| ||||| |||| Sbjct 75650 AGCCCTTGATGCAGACGACCTGGCGCAAGGTATGCACCACTTCCACCAGGTCGCCCTGGT 75591 Query 135466 CCTCCATGACCGCGTCGATGTCCTTGTAGGCCATCGGGATTTCGTCGATCACGCCAGCGT 135525 | |||||||||||||||||| || ||||| |||||||||||||||||||| | | Sbjct 75590 GCGCCATGACCGCGTCGATGTTTTTATAGGCGGCAGGGATTTCGTCGATCACGCCGCCAT 75531 Query 135526 CCTTACGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGTGAAG-GTCGCC 135584 |||| |||||||| | ||| | || || | | | || || ||||| | ||| Sbjct 75530 CCTTGCGGCACTCGATGCCGGCCGTCTGCTCGGCCAGTTCGAAGCGGTTGAAGCGGCGC- 75472 Query 135585 TTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCC 135644 || |||| | | || ||| | || ||||| ||||||||||| ||||||||||| ||| Sbjct 75471 TTCGCCTCGCTGCGGCTCATGCTGCGCCCCGCCCCGTGCGAGCAGGAGCAGAACGATTCC 75412 Query 135645 GCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCG 135704 | ||||||||||| ||||||||| || || ||||| |||||||||||| || Sbjct 75411 GGCTTGCCCTTGCCACGCACGATGAAGCTGCGCGCGCCCATGCTGCCGGGGATGATGCCC 75352 Query 135705 AACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAG 135764 | || ||| | ||||||| | ||||||||||| ||||| | | |||| | | Sbjct 75351 AGCTCCCCCTGCCGCGCCGAGATGGCGCCCTTGCGCGTCACATATAAATCATCGTTGCCG 75292 Query 135765 TGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAC 135824 || ||| | || |||||||||||||||||| | |||||| ||| | |||| Sbjct 75291 TGCGTTTCGCGCGCGATGTAGTTGTGGTGGCAGTTGATGGCTTCCCCGTCGAGCCGGAAC 75232 Query 135825 GGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 135884 |||||| | | |||| ||| | || || || ||| ||||||| |||||||| Sbjct 75231 GGCGGCGCGAACTTCGCCAGCACG---TCGAGCACGCGGCGCATCATCTCGCCGCGGTTG 75175 Query 135885 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGTTCG 135944 | | ||||| | ||||| ||||| | || || ||||||||||||| |||| ||| | Sbjct 75174 AGCAGCGCGTAATCCTGCGCCCAGTCCACCGCCTCCACGTAGTCGTCGAACACCGCGGAG 75115 Query 135945 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGCAGCATC 136004 ||||||| || | || |||||| |||| || ||| || || ||||||| | Sbjct 75114 CCTTCGCTCAGATACGCCAGGTCCGCGTCCGGCAGCTGCAGCTGGTGGCGCCGCATGTCC 75055 Query 136005 ATCTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCC 136064 ||| | ||| |||||||| ||| ||||||| |||||||| ||||||||||||| Sbjct 75054 TTCTGCGCGGCGG---CGATGAAGTAACGACCGATGGCGTTGCCGATGCCGCGCGAGCCC 74998 Query 136065 GAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTG 136124 || || ||||| ||||| |||||||| |||||||||||||||| || |||||||| ||| Sbjct 74997 GAATGCAGCATGACCCACACGCGCTGCTCCTCGTCGAGGCAGATTTCAATGAAGTGATTG 74938 Query 136125 CCGCCGCCCAGGGTGCC 136141 ||||| |||| |||||| Sbjct 74937 CCGCCCCCCAAGGTGCC 74921 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 136334 CAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCC 136393 |||| |||| || || || || |||| | | ||||| || || ||||||||||||| Sbjct 74728 CAGGTTGTCAGGCAGCTCGCCGGCCGTCAAGGTCGTGCGCACGGCGTTCATGCCGCAGCC 74669 Query 136394 GATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 136429 |||||||||||| |||||||||||||||| ||||| Sbjct 74668 GATGTCGACGCCCACGGCGGCCGGGATGACGGCGCC 74633 >seq5362 Length=3136 Score = 102 bits (112), Expect = 1e-16 Identities = 366/557 (66%), Gaps = 28/557 (5%) Strand=Plus/Plus Query 135608 CCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGAT 135667 ||| ||||||||||| | || || |||||| | | || ||||| ||| |||| Sbjct 17 CCGACCCGCGCCGTGGGGGCTGGACTTGAACGACGGCACGTTTCCCTTCCCGACGACGAC 76 Query 135668 GTAGGACTTG--GCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGAC 135725 ||| ||| | | ||||||||| |||||||||| |||| | | ||| | ||| Sbjct 77 GTA--ACTCGCCGTCCCCATCGAACCGGGGATGAGCCCGGGCGTGCCCTCGTTTGCCTTG 134 Query 135726 ACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAG 135785 | ||| ||||| ||| ||| | || | | | | | |||||| ||||||||| | || Sbjct 135 ATCGCACCCTTACGGCTCAGCCACACACCCCTGCCCATGTGGAACTCCTTCTGGGTGAAG 194 Query 135786 TTGTGGTGGCAGTTCA-CCGCTTCCTTGTCCGTC-TTGAACGGCGGCAGGCCCGACGCCC 135843 |||||||||||||| | ||||| | | |||| ||| || ||| | ||| | ||| Sbjct 195 TTGTGGTGGCAGTTGATCCGCT--CGACTTCGTCGATGATCGCGGGCTTG-CCGTCTCCC 251 Query 135844 -------GC---ATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCG 135893 || | | ||| || ||| ||| |||||||| |||||||||| | ||| Sbjct 252 ATGAAATGCGCGAAGTCCTTCACGACGCGGTCCATCATCTCTTCGCGGTTGAGCAAAGCG 311 Query 135894 AAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGT-TCGCCTTCGCA 135952 |||| ||| ||||| || | | ||| || ||| || ||| || | ||| Sbjct 312 AAGTGCTGAGCCCAGTTGAGATCGGTGATGTACGAGTCGAATTCGGGTGTCTTC-TCGAC 370 Query 135953 GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGCCGC-AGCATCATCTCCT 136011 || | ||||| ||| || | | ||| || | |||| ||| || |||| Sbjct 371 CAGGTAGGCAAGATCCGGATCGGGAAGGTTG---ATGTACCACCGCTCGCA-CAAGTCCT 426 Query 136012 TGGCCTTCTCGATGAAGATACGGC-CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGG 136070 |||| ||| |||| ||| | || ||| |||| |||| ||||| |||||||| Sbjct 427 TGGCGATCTTGATG-TGATGCTGCGCGAGCTTGTTTCCGATACCGCGGCTTCCCGAGTGC 485 Query 136071 AGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 136130 || | || |||||||| | | || ||||| ||||||||||||||||| || | Sbjct 486 AGGAACAGCCAGACGCCGTCGCTTTCATCGAGTGTCACCTCGATGAAGTGGTTACCAGAG 545 Query 136131 CCCAGGGTGCCCAGTTG 136147 ||||| || || || || Sbjct 546 CCCAGCGTTCCGAGCTG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 700322178382200