Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq582 295 1e-74 seq5362 111 2e-19 >seq582 Length=79996 Score = 295 bits (326), Expect = 1e-74 Identities = 438/615 (71%), Gaps = 12/615 (2%) Strand=Plus/Minus Query 139505 GCGGCACTCGACGCCTTCGGTCGCCTTGATCTGGTCTTCCAGCG--TGAAGGCGGC-CTT 139561 ||||||||||| ||| | ||| || | | | || |||| ||||| |||| ||| Sbjct 75526 GCGGCACTCGATGCCGGCCGTCTGCTCGGCCAGTTCGA--AGCGGTTGAAG-CGGCGCTT 75470 Query 139562 GGCGGCGGTGCGCGACATGGTCCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGGC 139621 || || |||| |||| | |||||||| ||||||||||| ||||||||||| || | Sbjct 75469 CGCCTCGCTGCGGCTCATGCTGCGCCCCGCCCCGTGCGAGCAGGAGCAGAACGATTCCGG 75410 Query 139622 GTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAA 139681 ||||||||||| ||||||||| || || ||||| ||||||||||||||| | Sbjct 75409 CTTGCCCTTGCCACGCACGATGAAGCTGCGCGCGCCCATGCTGCCGGGGATGATGCCCAG 75350 Query 139682 CTGGTCCTTCTGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTG 139741 || ||| | | ||||| | ||||||||||| ||||| | | |||| | ||| Sbjct 75349 CTCCCCCTGCCGCGCCGAGATGGCGCCCTTGCGCGTCACATATAAATCATCGTTGCCGTG 75290 Query 139742 GAACTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAGGG 139801 || | || |||||||||||||||||| | |||||| ||| | ||| || Sbjct 75289 CGTTTCGCGCGCGATGTAGTTGTGGTGGCAGTTGATGGCTTCCCCGTCGAGCCGGAACGG 75230 Query 139802 CGGCAGGCCCGAGGCGCGCATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGAT 139861 |||| | | || ||| |||| || || ||| ||||||| ||||||||| Sbjct 75229 CGGCGCGAACTTCGCCAGCA---CGTCGAGCACGCGGCGCATCATCTCGCCGCGGTTGAG 75173 Query 139862 CCGCGCGAAGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCC 139921 | ||||| | ||||| ||||| | || || ||||||||||||| ||| ||| ||| Sbjct 75172 CAGCGCGTAATCCTGCGCCCAGTCCACCGCCTCCACGTAGTCGTCGAACACCGCGGAGCC 75113 Query 139922 TTCCGACAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGCAGCATCAT 139981 ||| ||| |||| |||||| ||| || ||| | | || || |||| | | Sbjct 75112 TTCGCTCAGATACGCCAGGTCCGCGTCCGGCAGCTGCAGCTGGTGGCGCCGCATGTCCTT 75053 Query 139982 CTCCTTGGCCTTCTCGATGAAGATACGGCCGATGGTGTTGCCGACGCCGCGCGAGCCCGA 140041 || | ||| |||||||| ||| ||||||| |||||||| ||||||||||||||| Sbjct 75052 CTGCGCGGCGG---CGATGAAGTAACGACCGATGGCGTTGCCGATGCCGCGCGAGCCCGA 74996 Query 140042 GTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCC 140101 || ||||| ||||| |||||||| |||||||||||||||| || |||||||| ||||| Sbjct 74995 ATGCAGCATGACCCACACGCGCTGCTCCTCGTCGAGGCAGATTTCAATGAAGTGATTGCC 74936 Query 140102 GCCGCCCAGCGTGCC 140116 ||| |||| ||||| Sbjct 74935 GCCCCCCAAGGTGCC 74921 Score = 125 bits (138), Expect = 1e-23 Identities = 152/205 (74%), Gaps = 8/205 (4%) Strand=Plus/Minus Query 140307 GCGAGGCTGTCGGGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAG 140366 || ||| |||| ||||| || |||| ||| | ||||||||||| ||||||||||| Sbjct 74730 GCCAGGTTGTCAGGCAGCTCGCCGGCCGTCAAGGTCGTGCGCACGGCGTTCATGCCGCAG 74671 Query 140367 CCGATGTCCACGCCCACGGCCGCCGGGATGATGGCGCCCTTGGTCGGGATCACCGAGCCC 140426 |||||||| ||||||||||| |||||||||| |||||| || || ||||| ||| Sbjct 74670 CCGATGTCGACGCCCACGGCGGCCGGGATGACGGCGCCGCGCGTGGGAATCACGCTGCCG 74611 Query 140427 ACGGTCGAGCCGATGCCCATGTGGACGTCCGGCATCAGGGCCACATGCGAGTGGATGAAC 140486 ||||| | ||||||||| || ||||| ||||| |||||| || | |||| ||| Sbjct 74610 ACGGTGGCGCCGATGCCGGCATGCACGTCGGGCAT---GGCCAC-CACGTGCGGATAAAC 74555 Query 140487 ----GGCAGGGCGGCGAGGTTGTGC 140507 |||||| ||||| | |||| Sbjct 74554 GATGGGCAGGCTGGCGATATGGTGC 74530 >seq5362 Length=3136 Score = 111 bits (122), Expect = 2e-19 Identities = 371/557 (67%), Gaps = 28/557 (5%) Strand=Plus/Plus Query 139583 CCGCCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCGG--CGTTGCCCTTGCCGCGCACG 139640 ||| ||||||||||| | || || |||||| ||| |||| ||||| ||| ||| Sbjct 17 CCGACCCGCGCCGTGGGGGCTGGACTTGAACGA--CGGCACGTTTCCCTTCCCGACGACG 74 Query 139641 ATGTAGGACTTG--GCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTCTGAGCCG 139698 | ||| ||| | | ||||||||| |||||||||| ||| | | ||| | ||| Sbjct 75 ACGTA--ACTCGCCGTCCCCATCGAACCGGGGATGAGCCCGGGCGTGCCCTCGTTTGCCT 132 Query 139699 ACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCCTTCTGGACGT 139758 | ||| ||||| ||| ||| | || | | | | | |||||||||||||||| | Sbjct 133 TGATCGCACCCTTACGGCTCAGCCACACACCCCTGCCCATGTGGAACTCCTTCTGGGTGA 192 Query 139759 AGTTGTGGTGGCAGTTCA-CCGCT--TCCTTGTCCGTCTTGAAGGGC-GGCAGGCCC--- 139811 |||||||||||||||| | ||||| | | ||| | | |||| || | | | Sbjct 193 AGTTGTGGTGGCAGTTGATCCGCTCGACTTCGTCGATGATCGCGGGCTTGCCGTCTCCCA 252 Query 139812 -GAGGCGCGC-ATGGCGTCCAGGACCCGGATCATCATCATCTCGCGGTTGATCCGCGCGA 139869 || |||| | | | | || ||| ||| ||||||| |||||||||| | |||| Sbjct 253 TGAAATGCGCGAAGTCCTTCACGACGCGGTCCATCATCTCTTCGCGGTTGAGCAAAGCGA 312 Query 139870 AGTCCTGACCCCAGGCGACGGCTTCCACGTAGTCGTAGAATTCCGGCTCGCCTTC-CGA- 139927 ||| |||| ||||| || | | ||| || |||||| || | |||| ||| Sbjct 313 AGTGCTGAGCCCAGTTGAGATCGGTGATGTACGAGTCGAATTCGGG--TGTCTTCTCGAC 370 Query 139928 CAGCCACGCGAGGTCCTTGTCGAGCGGCTTCTGACCGTCCCGACGC-AGCATCATCTCCT 139986 ||| | || || ||| ||| | | | ||| || || ||| ||| || |||| Sbjct 371 CAGGTAGGCAAGATCCGGATCGGGAAGGT--TGA-TGTACCACCGCTCGCA-CAAGTCCT 426 Query 139987 TGGCCTTCTCGATGAAGATACGGC-CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGG 140045 |||| ||| |||| ||| | || ||| |||| |||| ||||| |||||||| Sbjct 427 TGGCGATCTTGATG-TGATGCTGCGCGAGCTTGTTTCCGATACCGCGGCTTCCCGAGTGC 485 Query 140046 AGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 140105 || | || |||||||| | | || ||||| ||||||||||||||||| || | Sbjct 486 AGGAACAGCCAGACGCCGTCGCTTTCATCGAGTGTCACCTCGATGAAGTGGTTACCAGAG 545 Query 140106 CCCAGCGTGCCCAGTTG 140122 |||||||| || || || Sbjct 546 CCCAGCGTTCCGAGCTG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715650694464000