Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq582 345 6e-90 seq5362 96.9 5e-15 >seq582 Length=79996 Score = 345 bits (382), Expect = 6e-90 Identities = 517/737 (70%), Gaps = 8/737 (1%) Strand=Plus/Minus Query 137205 AGCCCTTCACGCAGAGGACTTGCTTGAGGGTGTGGACGATGTCCACGAGGTCCTTCTGGG 137264 ||||||| | ||||| ||| || | ||| || || | ||||| ||||| |||| Sbjct 75650 AGCCCTTGATGCAGACGACCTGGCGCAAGGTATGCACCACTTCCACCAGGTCGCCCTGGT 75591 Query 137265 CCTCCATGACCGCGTCGNNNNNNNNNNNNNNNNNNNNNATTTCGTCGATCACGCCGGCGT 137324 | |||||||||||||| |||||||||||||||||| | | Sbjct 75590 GCGCCATGACCGCGTCGATGTTTTTATAGGCGGCAGGGATTTCGTCGATCACGCCGCCAT 75531 Query 137325 CCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGAGTGAAG-GTCGCC 137383 ||||||||||||| | ||| | || || | | | || | ||||| | ||| Sbjct 75530 CCTTGCGGCACTCGATGCCGGCCGTCTGCTCGGCCAGTTCGAAGCGGTTGAAGCGGCGC- 75472 Query 137384 TTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCC 137443 || |||| | | || ||| | || ||||| ||||||||||| ||||||||||| ||| Sbjct 75471 TTCGCCTCGCTGCGGCTCATGCTGCGCCCCGCCCCGTGCGAGCAGGAGCAGAACGATTCC 75412 Query 137444 GCATTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCG 137503 | ||||||||||| ||||||||| || || ||||| |||||||||||| || Sbjct 75411 GGCTTGCCCTTGCCACGCACGATGAAGCTGCGCGCGCCCATGCTGCCGGGGATGATGCCC 75352 Query 137504 AACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAG 137563 | || ||| | ||||||| | ||||||||||| ||||| | | |||| | | Sbjct 75351 AGCTCCCCCTGCCGCGCCGAGATGGCGCCCTTGCGCGTCACATATAAATCATCGTTGCCG 75292 Query 137564 TGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGTCCGTCTTGAAC 137623 || ||| | || |||||||||||||||||| | |||||| ||| | |||| Sbjct 75291 TGCGTTTCGCGCGCGATGTAGTTGTGGTGGCAGTTGATGGCTTCCCCGTCGAGCCGGAAC 75232 Query 137624 GGCGGCAGGCCCGACGCCCGCATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTG 137683 |||||| | | |||| ||| | || || || ||| ||||||| |||||||| Sbjct 75231 GGCGGCGCGAACTTCGCCAGCACG---TCGAGCACGCGGCGCATCATCTCGCCGCGGTTG 75175 Query 137684 ATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGGCTCG 137743 | | ||||| | ||||| ||||| | || || ||||||||||||| |||| ||| | Sbjct 75174 AGCAGCGCGTAATCCTGCGCCCAGTCCACCGCCTCCACGTAGTCGTCGAACACCGCGGAG 75115 Query 137744 CCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTGCGCCCGTCACGGCGCAGCATC 137803 ||||||| || | || |||||| |||| || ||| || || ||||| |||| Sbjct 75114 CCTTCGCTCAGATACGCCAGGTCCGCGTCCGGCAGCTGCAGCTGGT---GGCGCCGCATG 75058 Query 137804 ATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGCCGCGCGAGCCC 137863 || || || |||||||| || ||||||| |||||||| ||||||||||||| Sbjct 75057 TCCTTCTGCGCGGCGGCGATGAAGTAACGACCGATGGCGTTGCCGATGCCGCGCGAGCCC 74998 Query 137864 GAGTGGAGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTG 137923 || || ||||| ||||| |||||||| |||||||||||||||| || |||||||| ||| Sbjct 74997 GAATGCAGCATGACCCACACGCGCTGCTCCTCGTCGAGGCAGATTTCAATGAAGTGATTG 74938 Query 137924 CCGCCGCCCAGGGTGCC 137940 ||||| |||| |||||| Sbjct 74937 CCGCCCCCCAAGGTGCC 74921 Score = 87.8 bits (96), Expect = 3e-12 Identities = 77/96 (80%), Gaps = 0/96 (0%) Strand=Plus/Minus Query 138133 CAGGCTGTCGGGGAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCC 138192 |||| |||| || || || || |||| | | ||||| || || ||||||||||||| Sbjct 74728 CAGGTTGTCAGGCAGCTCGCCGGCCGTCAAGGTCGTGCGCACGGCGTTCATGCCGCAGCC 74669 Query 138193 GATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 138228 |||||||||||| |||||||||||||||| ||||| Sbjct 74668 GATGTCGACGCCCACGGCGGCCGGGATGACGGCGCC 74633 >seq5362 Length=3136 Score = 96.9 bits (106), Expect = 5e-15 Identities = 366/557 (66%), Gaps = 28/557 (5%) Strand=Plus/Plus Query 137407 CCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCATTGCCCTTGCCGCGCACGAT 137466 ||| ||||||||||| | || || |||||| | | || ||||| ||| |||| Sbjct 17 CCGACCCGCGCCGTGGGGGCTGGACTTGAACGACGGCACGTTTCCCTTCCCGACGACGAC 76 Query 137467 GTAGGACTTG--GCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGAC 137524 ||| ||| | | ||||||||| |||||||||| |||| | | ||| | ||| Sbjct 77 GTA--ACTCGCCGTCCCCATCGAACCGGGGATGAGCCCGGGCGTGCCCTCGTTTGCCTTG 134 Query 137525 ACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAG 137584 | ||| ||||| ||| ||| | || | | | | | |||||| ||||||||| | || Sbjct 135 ATCGCACCCTTACGGCTCAGCCACACACCCCTGCCCATGTGGAACTCCTTCTGGGTGAAG 194 Query 137585 TTGTGGTGGCAGTTCA-CCGCTTCCTTGTCCGTC-TTGAACGGCGGCAGGCCCGACGCCC 137642 |||||||||||||| | ||||| | | |||| ||| || ||| | ||| | ||| Sbjct 195 TTGTGGTGGCAGTTGATCCGCT--CGACTTCGTCGATGATCGCGGGCTTG-CCGTCTCCC 251 Query 137643 -------GC---ATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCG 137692 || | | ||| || ||| ||| |||||||| |||||||||| | ||| Sbjct 252 ATGAAATGCGCGAAGTCCTTCACGACGCGGTCCATCATCTCTTCGCGGTTGAGCAAAGCG 311 Query 137693 AAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGG-CTCGCCTTCGCA 137751 |||| ||| ||||| || | | ||| || ||| || || || | ||| Sbjct 312 AAGTGCTGAGCCCAGTTGAGATCGGTGATGTACGAGTCGAATTCGGGTGTCTTC-TCGAC 370 Query 137752 GAGCCAAGCAAGGTCCTTGTCCAGCGGCTTG-CGCCCGTCACGGCGCAGCATCATCTCCT 137810 || | ||||| ||| || | | ||| | | ||| || | ||| || |||| Sbjct 371 CAGGTAGGCAAGATCCGGATCGGGAAGGTTGATGTAC--CACCGCTC-GCA-CAAGTCCT 426 Query 137811 TGGCCTTCTCGATGAAGATGCGGC-CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGG 137869 |||| ||| |||| ||||| || ||| |||| |||| ||||| |||||||| Sbjct 427 TGGCGATCTTGATG-TGATGCTGCGCGAGCTTGTTTCCGATACCGCGGCTTCCCGAGTGC 485 Query 137870 AGCATCACCCAGACGCGCTGATCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCG 137929 || | || |||||||| | || ||||| ||||||||||||||||| || | Sbjct 486 AGGAACAGCCAGACGCCGTCGCTTTCATCGAGTGTCACCTCGATGAAGTGGTTACCAGAG 545 Query 137930 CCCAGGGTGCCCAGTTG 137946 ||||| || || || || Sbjct 546 CCCAGCGTTCCGAGCTG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709597354362400