Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Dictyostelium_20polycarpum_20[genbank_20GCA_5F900092255.1_202017-01- 02] 14,005 sequences; 62,220,117 total letters Query= NC_019411.1 Length=219216 Score E Sequences producing significant alignments: (Bits) Value seq582 320 2e-82 seq5362 102 1e-16 >seq582 Length=79996 Score = 320 bits (354), Expect = 2e-82 Identities = 450/628 (72%), Gaps = 8/628 (1%) Strand=Plus/Minus Query 136078 CACGCCGGCGTCCTTGCGGCACTCCACGCCCTCGGTGGCCTTGATCTGGTCCTCCAGGGT 136137 ||||||| | |||||||||||||| | ||| | || || | | | || || | Sbjct 75541 CACGCCGCCATCCTTGCGGCACTCGATGCCGGCCGTCTGCTCGGCCAGTTCGAAGCGGTT 75482 Query 136138 GAAG-GTCGCCTTGGCCTGGGTCCGCGACATCGTCCGGCCCGCGCCGTGCGAGCACGAGC 136196 |||| | ||| || |||| | | || ||| | || ||||| ||||||||||| |||| Sbjct 75481 GAAGCGGCGC-TTCGCCTCGCTGCGGCTCATGCTGCGCCCCGCCCCGTGCGAGCAGGAGC 75423 Query 136197 AGAACGAGTCCGCGTTGCCCTTGCCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGG 136256 ||||||| |||| ||||||||||| ||||||||| || || ||||| ||||| Sbjct 75422 AGAACGATTCCGGCTTGCCCTTGCCACGCACGATGAAGCTGCGCGCGCCCATGCTGCCGG 75363 Query 136257 GGATGATCCCGAACTGGTCCTTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCC 136316 ||||||| || | || ||| | ||||||| | ||||||||||| ||||| | | Sbjct 75362 GGATGATGCCCAGCTCCCCCTGCCGCGCCGAGATGGCGCCCTTGCGCGTCACATATAAAT 75303 Query 136317 ACTCGTCGAAGTGGAATTCCTTCTGGACGTAGTTGTGGTGGCAGTTCACCGCTTCCTTGT 136376 |||| | ||| ||| | || |||||||||||||||||| | |||||| || Sbjct 75302 CATCGTTGCCGTGCGTTTCGCGCGCGATGTAGTTGTGGTGGCAGTTGATGGCTTCCCCGT 75243 Query 136377 CCGTCTTGAACGGCGGCAGGCCCGACGCTCGCATGGCCTCCAGGACCCGGACCATCATCA 136436 | | |||||||||| | | ||| ||| | || || || ||| ||||||| Sbjct 75242 CGAGCCGGAACGGCGGCGCGAACTTCGCCAGCACG---TCGAGCACGCGGCGCATCATCT 75186 Query 136437 TCTCGCGGTTGATCCGCGCGAAGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGA 136496 ||||||||| | ||||| | ||||| ||||| | || || ||||||||||||| || Sbjct 75185 CGCCGCGGTTGAGCAGCGCGTAATCCTGCGCCCAGTCCACCGCCTCCACGTAGTCGTCGA 75126 Query 136497 ACTCCGGCTCGCCTTCGCAGAGCCAAGCAAGGTCCTTGTCCAGCGGCTTACGCCCGTCAC 136556 || ||| |||||||| || | || |||||| |||| || ||| || || Sbjct 75125 ACACCGCGGAGCCTTCGCTCAGATACGCCAGGTCCGCGTCCGGCAGCTGCAGCTGGT--- 75069 Query 136557 GGCGCAGCATCATCTCCTTGGCCTTCTCGATGAAGATGCGGCCGATGGTGTTGCCGACGC 136616 ||||| |||| || || || |||||||| || ||||||| |||||||| || Sbjct 75068 GGCGCCGCATGTCCTTCTGCGCGGCGGCGATGAAGTAACGACCGATGGCGTTGCCGATGC 75009 Query 136617 CGCGCGAGCCCGAGTGGAGCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGA 136676 ||||||||||||| || ||||| ||||| |||||||| |||||||||||||||| || | Sbjct 75008 CGCGCGAGCCCGAATGCAGCATGACCCACACGCGCTGCTCCTCGTCGAGGCAGATTTCAA 74949 Query 136677 TGAAGTGGTTGCCGCCGCCCAGGGTGCC 136704 ||||||| |||||||| |||| |||||| Sbjct 74948 TGAAGTGATTGCCGCCCCCCAAGGTGCC 74921 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 136895 GCGAGGCTGTCGGGAAGGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAG 136954 || ||| |||| || || || || |||| | | ||||| || || ||||||||||| Sbjct 74730 GCCAGGTTGTCAGGCAGCTCGCCGGCCGTCAAGGTCGTGCGCACGGCGTTCATGCCGCAG 74671 Query 136955 CCGATGTCGACGCCGACGGCGGCCGGGATGATCGCGCC 136992 |||||||||||||| |||||||||||||||| ||||| Sbjct 74670 CCGATGTCGACGCCCACGGCGGCCGGGATGACGGCGCC 74633 >seq5362 Length=3136 Score = 102 bits (112), Expect = 1e-16 Identities = 366/556 (66%), Gaps = 26/556 (5%) Strand=Plus/Plus Query 136171 CCGGCCCGCGCCGTGCGAGCACGAGCAGAACGAGTCCGCGTTGCCCTTGCCGCGCACGAT 136230 ||| ||||||||||| | || || |||||| | |||| ||||| ||| |||| Sbjct 17 CCGACCCGCGCCGTGGGGGCTGGACTTGAACGACGGCACGTTTCCCTTCCCGACGACGAC 76 Query 136231 GTAGGACTTG--GCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTCTGCGCCGAC 136288 ||| ||| | | ||||||||| |||||||||| |||| | | ||| | ||| Sbjct 77 GTA--ACTCGCCGTCCCCATCGAACCGGGGATGAGCCCGGGCGTGCCCTCGTTTGCCTTG 134 Query 136289 ACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAATTCCTTCTGGACGTAG 136348 | ||| ||||| ||| ||| | || | | | | | |||||| ||||||||| | || Sbjct 135 ATCGCACCCTTACGGCTCAGCCACACACCCCTGCCCATGTGGAACTCCTTCTGGGTGAAG 194 Query 136349 TTGTGGTGGCAGTTCA-CCGCTTCCTTGTCCGTC-TTGAACGGCGGCAGGCC-------- 136398 |||||||||||||| | ||||| | | |||| ||| || ||| ||| Sbjct 195 TTGTGGTGGCAGTTGATCCGCT--CGACTTCGTCGATGATCGCGGGCTTGCCGTCTCCCA 252 Query 136399 CGACGCTCGC-ATGGCCTCCAGGACCCGGACCATCATCATCTCGCGGTTGATCCGCGCGA 136457 || ||| | | ||| || ||| ||| |||||||| |||||||||| | |||| Sbjct 253 TGAAATGCGCGAAGTCCTTCACGACGCGGTCCATCATCTCTTCGCGGTTGAGCAAAGCGA 312 Query 136458 AGTCCTGGCCCCAGGCGACGGCTTCCACGTAGTCGTGGAACTCCGG-CTCGCCTTCGCAG 136516 ||| ||| ||||| || | | ||| || ||| || || || | ||| Sbjct 313 AGTGCTGAGCCCAGTTGAGATCGGTGATGTACGAGTCGAATTCGGGTGTCTTC-TCGACC 371 Query 136517 AGCCAAGCAAGGTCCTTGTCCAG-CGGCTTACGCCCGTCACGGCGCAGCATCATCTCCTT 136575 || | ||||| ||| || | || | | | | ||| || | ||| || ||||| Sbjct 372 AGGTAGGCAAGATCCGGATCGGGAAGGTTGATGTAC--CACCGCTC-GCA-CAAGTCCTT 427 Query 136576 GGCCTTCTCGATGAAGATGCGGC-CGATGGTGTTGCCGACGCCGCGCGAGCCCGAGTGGA 136634 ||| ||| |||| ||||| || ||| |||| |||| ||||| |||||||| | Sbjct 428 GGCGATCTTGATG-TGATGCTGCGCGAGCTTGTTTCCGATACCGCGGCTTCCCGAGTGCA 486 Query 136635 GCATCACCCAGACGCGCTGGTCCTCGTCGAGGCAGACCTCGATGAAGTGGTTGCCGCCGC 136694 | | || |||||||| | | || ||||| ||||||||||||||||| || || Sbjct 487 GGAACAGCCAGACGCCGTCGCTTTCATCGAGTGTCACCTCGATGAAGTGGTTACCAGAGC 546 Query 136695 CCAGGGTGCCCAGTTG 136710 |||| || || || || Sbjct 547 CCAGCGTTCCGAGCTG 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 701240417604800